Garra rufa (doctor fish): 141342675
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Entry
141342675 CDS
T11039
Symbol
smg9
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9
KO
K18735
protein SMG9
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141342675 (smg9)
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
141342675 (smg9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
ABC_tran
AAA_16
DUF6079_1st
URGCP_GTPase
AAA_30
MMR_HSR1
AAA_14
NB-ARC
Motif
Other DBs
NCBI-GeneID:
141342675
NCBI-ProteinID:
XP_073703276
LinkDB
All DBs
Position
9:29304984..29312490
Genome browser
AA seq
504 aa
AA seq
DB search
MSESGHSQPGMYGQGRRRRRRRDRDPGPPGQNLSGPSRDRDYVPRERRDGSEEPTGPLLQ
KTPIILAKPPGERSKPSAPASGAPSLEKPIMLIKTRDEGGKPGNTPDVAPSVSGAGTAKL
EREGQRPTQPVYQIQNRGMGSAASGGAVDPVIGQTKLLPPEKMKHSIKLVDDQMNWCDSA
MEYLRDQTDMLVVGVIGLQGTGKSTIMSLLSANSPEEDQRAYVFRAQTQEIKERAGNQSS
GIDFYITQERVIFLDTQPILSPSILDHLINNDRKLPPEYNLPHTYVEMQSLQITAFLFTV
CHVVIVIQDWFTDINLYRFLQTAEMLKPSTPSASHDSTGSSGADDGSEYYPHIVFLQNKA
RREEFCPRNLKKMHMAVDKLMAHSHLKYKGTLSMLDCNIFPGLNRDYLETEVNLFLLPMM
ENDGEDALTRAGSGPPLFSLLPGYRGHPSFSSLVSKFRSQILAMSRSQLSHTILTEKNWF
HYAARIWDGVKKSSALSEYSRLLS
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagtccggtcacagtcagcccggtatgtacggacagggaaggaggaggaggaga
cggcgagaccgagacccaggaccaccgggtcaaaacctctccggccccagtcgggatcga
gactatgttccccgtgagcgcagggatggcagtgaggaacctacaggacctcttctacag
aagactcccattattcttgctaaaccacctggagagcgatccaaaccaagtgctccagca
agtggagccccatctttggaaaagccgatcatgcttattaaaaccagagatgaaggtggg
aaacctgggaacacacctgatgtggctccttcggtctcaggtgcaggaactgccaaactg
gagagggaaggccagcggccgacccaacctgtgtatcagatccagaacagaggcatgggc
tcagctgcatccggtggagctgtggatcctgtgattggccaaactaagctcctcccccct
gagaagatgaagcacagtattaaactggtggatgatcaaatgaattggtgtgacagcgct
atggagtacttgcgagaccaaacggatatgttagtagtgggagttattgggctacaaggc
actggaaaatccacaatcatgtctctcctctctgcaaacagccccgaggaggaccagagg
gcgtatgtattcagagctcagacgcaggagatcaaggagagagctgggaaccagagcagt
ggaattgatttctacatcactcaggagagggtcatctttctggacacccagccaatttta
agcccctctattttggatcatctcattaacaatgaccgcaagcttccacctgaatacaac
ctcccacatacgtatgtagagatgcagtctcttcagatcacagccttcctctttaccgta
tgtcatgttgtgattgtgattcaggactggttcactgatatcaacttatacaggtttctg
cagactgctgagatgctgaaaccctcgactccatctgccagtcatgacagcaccggctcc
tcaggggcagatgatggctctgagtattaccctcacatagttttcttgcagaacaaagcg
aggagggaggagttctgtccacgaaacctgaaaaagatgcatatggctgttgacaagctt
atggcccattcccatctaaaatataaaggcacattatccatgctggattgtaacatattc
ccgggactgaatcgagattacttggagacagaagtcaaccttttccttttgcctatgatg
gagaatgatggggaagatgctttaacaagagcaggttcaggtccccctcttttctctctg
ctgcctggttacagaggtcatcccagcttttcatcactggtttcgaaattccgaagtcag
atcttggctatgtcccgcagtcagctctcacacacaatcctcactgagaaaaactggttt
cactatgcggctagaatttgggatggtgtcaagaaatcatctgcgctctctgaatatagc
cgactactctcatag
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