KEGG   Garra rufa (doctor fish): 141342994
Entry
141342994         CDS       T11039                                 
Symbol
mdc1
Name
(RefSeq) mediator of DNA damage checkpoint protein 1
  KO
K20780  mediator of DNA damage checkpoint protein 1
Organism
grf  Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:grf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:grf03400]
    141342994 (mdc1)
DNA repair and recombination proteins [BR:grf03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    141342994 (mdc1)
SSDB
Motif
Pfam: BRCT_2 BRCT RTT107_BRCT_5 FHA BRCT_3 PTCB-BRCT
Other DBs
NCBI-GeneID: 141342994
NCBI-ProteinID: XP_073703686
LinkDB
Position
9:24773292..24783244
AA seq 1990 aa
MDATQQIDDPFSEEEEEHEEEEKGRPEREQLATLKVFKNDHIPESEFPLYVGENVIGRDP
AACSVLLPARSVSGRHAVISISVFRSSSDRFENGEDVEALLWDMASLNGTRKGRLKLTPQ
VRYALTEGQSVVFADIPCQYVGRNITKKDTRITPEKGGVSKKEKVLSSSDSESELRNKLN
VKERSVLPPVPLWSSEDEQPIVSSPQSAHKQPEITLVPESDSDGESAPDERKDFVSDSAS
SSHPCSSTNSSFLTPAKSVIPESEDESSITPSLAASIDRFRLRQTPDLNSSNPGPLVLNL
DSDIDLEEKDMEKSKSEPEALPALAAKVEPVSSAKFHMDSDTDVEEEEPETSKAEPKAQE
AVTLEKSLSSVGLHMDSDTDVEEDAEEKNKTEPEVQIEQAPSVGPASSADLHMDSDTDVE
EEEPDASKAKPEAQEAVTLDKSVSSVGLHMDSDTDVEEDAEEKSKNEPKVHTEEAPKVQS
DLHMDSDTDVEDNEASVTENVSRKEAVTVNPQSAAVPHTEFHLDSDTDVEDDSSMKISTA
TEVSLTAGEQSDVKPTLVPGTELNMDSDTDVDEENEDKEKVIAKDLLSNSETDYEDHFKP
LPIKAVKVAQSHKVSVGSKAEQSEESTHKKQDYLSQAKTNFEEPTQAFGDLEEDWDLMPT
QAYGAVVASARLKPKQPDLEATQAYGTETDKEEDQEPLNHTQPYSNLSTAETQLIPVEKP
DEEEEEDKETQNDSHLSTADTLILASTPKREEQTQPFSLFTAQTQLVFEGEDKEIYQNEP
TQLMTDTTDETQEGEENMKRGRRNCGEGTVHKGKNTSSCLIIAETQPMCEEEEATDADLS
EDSFQKQQAEKYDSAHLAENNLSSHHTIAETQPMCDDEETPDQDNVVSSTRIEKPSSSHI
TIAETQPMFEEDEAPEDDVSRRQTKDEPIHHNEKASTSNHAILETQTVGEDDEGQEKELS
SKTSIRRSRRCRPKNDKEVPQPAEAVVDHTIAETQPMCEEEQIEDLKTEVSSGKQNKNQQ
AHEFKSPEFAEMDLKACVNVAETQPMCEEEAAPCEDLTDAVSTRQIDEDRSTELPIPSSS
HVSVNETQPVQEEDEGQEKVLSSKLASRSSRRGRPKKDDEVKQTAEAAVHKTITETQPVP
EEVIEKDKDLNSAMKSSRSRRGRQMKEDTVPQPAEAAISSISINTETQPVHEDITERDEE
LIGIRSKRPRKGRQKDEGEPAQSSEPNSDLSVVETQPMVEPSGRSSRRQRKENTELEKEN
PQEEPSGRSSRRQRKENTEVESETSASSKVQGKPRKGQEGKRKRGKALSEDEEESEEEKP
TRRGTRRTGVKLKCSEKEEEEKLEERNAQEEKKRMEKELQEREEIERLEMEEKEKLKFER
KKQEELKQRERAETEMRQKELEEKERLKREEEEKMRKENERIQREKEEKDRLEKEEKERL
ERERRQLEEQRRKEEEERIQREKEVKDRLEKEEKKRLERERRELEEQRRKEEEERIQREK
EEKDRLEKEKERLERESREQEEQKRKEEEERIQKETERSGVERARGQKKTNERNHQKQLK
NEQLEEDKTKLEAPLVPPARRSRRCSSSSMNSDQSVSSKQEVPSQRGRGQGRGRGRGRGK
QTADEQPINARKSGRRGPASAVEDPDQNSSLTTRSRSRSSSRSSERSAQSIEPSNQGTRG
RGRGRKSIKLPEPEVASQAKTSGKGRGRGGRRSGAENVNVVEDNEREQDAKVAEDNTAVP
QTNSRGRKRAANTSTSPEEAPAPTPKTPRRSVASQALKVLFTGLTDEDGERVVSRLGGSL
AKGVNDMTHLVTDKARRTVKFLCAVARGVPIVTPDWLKKCGKAGHFLSTDEYILKDAEQE
KKFSFSLQKSLQTAQSQPLLKGYGIHVTPSVMPEPSQMKEIIICCGARYLPKMPSAQKSV
QEHTVVVSCEQDRALCDKAESMSLPVVSTEFLLTGILQQRVDLQAYSLTSSLNTSNQPAA
PKAAARGRRK
NT seq 5973 nt   +upstreamnt  +downstreamnt
atggatgccactcagcagattgacgatcccttctctgaagaagaagaagaacatgaagaa
gaagagaaaggaagaccagaaagagaacaattagcaacactaaaggtgttcaaaaatgac
cacatacctgagtcagaattccctctctacgtcggagagaatgtcatcggtcgtgatcct
gctgcctgttctgttctgcttccagcccgatctgtatccggtcggcatgctgtcatctcc
atctcagtattccgctctagcagcgatcgtttcgaaaacggtgaagatgtagaagcactt
ttatgggacatggccagtttgaatggaaccagaaaaggtagactgaagctgacgcctcag
gtacgatacgctttgaccgagggacagagtgtggtgttcgctgatatcccatgtcagtac
gttggccggaacatcacaaagaaagatacgcgcataactccagagaaaggaggagtgtcc
aaaaaggagaaagttttatcaagcagtgactcggagtcggagttgcggaataagttgaat
gtgaaagagaggagtgttttgcctcctgtgcctttatggagctctgaggatgaacaaccc
atcgtgagttcaccacagtcagctcacaaacagcctgagatcaccctggtgcctgaatca
gactcggatggagagagcgccccggatgagagaaaagattttgtttcagactctgcgtcc
tcctcacatccgtgtagttcaacaaattcgtcattcctgacccctgcaaaaagcgtcatt
ccagagagtgaggatgaaagttccatcactccatcacttgctgcctcaatagaccggttt
agactgaggcaaactcctgatttaaactcatctaaccctggccctctagtcctaaatctg
gacagtgacattgatttggaagaaaaagacatggagaaaagcaaatctgaaccagaggct
ctgcctgctctagctgcaaaggtggaaccagtgtcttcagctaaatttcatatggacagt
gatactgatgttgaggaagaggaaccggagacaagtaaggctgaaccaaaagctcaagaa
gcagtaactctagagaaatctttatcttcggttggacttcatatggacagtgatactgat
gttgaagaagatgcggaagagaaaaataaaactgaaccagaggttcagattgaacaagct
ccaagtgtgggtccagcatcttcagctgatcttcatatggacagtgatactgatgttgag
gaagaggagccagatgcaagtaaggctaaaccagaggctcaagaagcagtaactcttgat
aaatctgtctcttcagttggacttcacatggacagtgatactgatgttgaagaagatgca
gaagagaaaagcaagaatgaaccaaaggttcacactgaagaagctccaaaggtgcaatca
gatcttcatatggacagcgatactgatgttgaggataatgaggcttctgtaactgaaaat
gtctctagaaaggaagcagttacagtaaatcctcaatcagcagcagtaccacatacagaa
ttccacttggacagtgacactgatgttgaagatgatagttccatgaagatttccactgca
acagaggtttcacttaccgctggagagcaaagtgatgtcaaacccacattagttccaggg
acagagctcaacatggacagtgacacagatgtagatgaagagaatgaggacaaggaaaag
gtgattgccaaagatcttctgtcaaacagtgaaacagattatgaagatcattttaaacct
ttacctattaaagctgtcaaggttgcacagagtcacaaggtttctgtaggtagcaaagcc
gagcaatcagaagagagcacccataaaaaacaagactatctttctcaagcaaagactaat
tttgaggaaccaacccaagcttttggtgacttagaagaagattgggacctaatgcccaca
caagcatatggagctgttgtagccagtgctaggcttaagccaaagcagcctgatcttgag
gctacacaggcatatggaacagagacagacaaggaggaagaccaggagcctttaaaccat
acccaaccgtactccaacctctcaactgctgaaactcaactcatccctgtagaaaagcct
gatgaggaggaggaggaagataaagagacacaaaatgactctcacctttctactgcagac
actctgattttagccagcaccccaaaacgtgaggagcagacacagccattttctctcttc
acagcccaaacacaacttgtctttgaaggagaagacaaagagatttatcagaatgagcct
acccagctcatgactgacaccactgatgaaacgcaggagggtgaggagaacatgaaaaga
ggtaggagaaactgtggtgaaggaacagtacacaaaggaaaaaacaccagctcctgtctt
ataattgctgaaactcagcccatgtgtgaggaagaagaggcaacagatgcagatctgagt
gaggacagctttcagaagcaacaggctgagaaatatgattctgcacatcttgctgaaaac
aacttaagctcccatcacactatagctgaaacacaaccaatgtgtgatgatgaagaaaca
ccagatcaggacaatgttgtcagcagtactcgcatagaaaaaccttcctcttcccatatc
accattgctgaaacgcaaccaatgtttgaggaagacgaagcaccagaggatgatgtcagc
agaagacaaaccaaagatgagcccatacatcataatgaaaaagcctctacctccaatcat
gccatccttgaaacacagactgttggtgaagatgatgagggacaagagaaagaacttagc
agcaagacatccatcagaagatcacgcaggtgtagaccaaaaaacgacaaggaagtccca
caacctgccgaggctgttgtcgatcacactatagcagaaacacagccaatgtgtgaagaa
gaacaaattgaggatctgaaaactgaggtcagctctggaaaacagaataaaaaccaacaa
gcgcatgaattcaaatctccagaatttgcagaaatggacttgaaagcatgtgtcaatgtt
gctgaaacgcaacctatgtgtgaagaagaagcggcaccatgtgaagatctaactgatgca
gttagtaccaggcagatagatgaagacagatccacagaactcccaataccttcgagctcc
catgtcagcgtaaatgaaacacagcctgtgcaggaggaagatgaaggacaggaaaaagtc
ctcagcagcaagttggcaagcagaagttcacgcaggggaagaccaaagaaagatgacgag
gtaaagcaaactgctgaggctgctgttcataagactatcacagaaacccaaccagttcct
gaagaagtgattgaaaaggacaaagatctgaacagtgcaatgaaatccagtagatcccgc
agaggaaggcagatgaaagaggacaccgttccgcaacctgctgaagctgccatcagttcc
atttccattaacacagaaacgcagcctgttcatgaggacataactgaaagggatgaagag
ctgattggcatcagatccaaaagaccccgcaaaggtagacaaaaagatgaaggtgaacct
gcacagtcttctgaaccaaactctgatctcagtgttgttgaaacacagcccatggttgaa
cccagtggcagaagtagcaggagacagaggaaagagaatacagaactggagaaggagaac
ccccaagaagaacctagtggcagaagtagcagaagacagaggaaagaaaatacagaggtg
gagagtgagacaagtgcgtctagtaaagtccaaggtaaacctagaaaagggcaggaggga
aaaagaaagagggggaaagcattgtctgaggacgaggaagagagtgaagaagaaaaaccc
acaaggagaggaaccagacggacaggtgtcaagctgaagtgtagtgaaaaggaagaagag
gaaaaattggaggagaggaatgcccaagaagagaaaaagagaatggagaaagagctccaa
gaaagagaagagatagagaggttagagatggaagaaaaggagaaactgaagtttgagaga
aagaaacaagaagaacttaaacaaagggagagggctgaaaccgaaatgagacaaaaagaa
ttagaggaaaaggaacgactgaaaagggaagaagaggaaaaaatgagaaaagaaaatgag
agaattcagagggaaaaagaggaaaaagatcgtttagaaaaagaagagaaggaaaggtta
gagagggagaggagacagctagaagaacaaagacgaaaagaagaagaagaaagaattcaa
agggaaaaagaggtaaaggatcgtttggaaaaagaagagaagaaaagattggagagggag
aggagagaactagaagagcaaagacgaaaagaagaagaggaaagaattcagagggaaaaa
gaggaaaaagatagattggaaaaagaaaaggagaggttagagagggagagcagagaacaa
gaggaacaaaaacgaaaagaagaagaggaaagaattcaaaaggagacggaaagatcaggt
gtggaaagagcaagaggacaaaaaaagacaaatgagagaaaccaccagaaacaactaaag
aatgagcaactggaggaggacaagaccaaattagaagctcctctagttcctccagccagg
cgatcacgtcgctgctcaagctcctctatgaactcggatcagtctgtatcctcaaaacag
gaggtgcctagccagaggggacgagggcagggcagagggcgaggacgaggccgagggaag
cagacagctgatgagcaacccatcaatgctagaaagtctggcaggagaggaccagctagt
gcagttgaagacccagatcagaactccagtttaacaactcgttctcgatcccgctccagt
tctagaagttctgaaagatctgctcaaagtatcgaaccttcaaaccaagggactagagga
agaggcagaggcaggaagagtataaaactaccagaaccagaagttgcttcccaagctaaa
acttctggaaaaggcaggggaagaggaggaaggcgttctggtgcagagaatgtaaatgtt
gtggaggacaatgagcgtgaacaagatgctaaagtggctgaggacaacactgctgtaccc
caaaccaacagcagaggtcgtaagagagcagccaacacaagcacatccccagaagaggct
cctgcacccacacccaagactccaaggcgctctgtggctagtcaggcgctcaaggtgcta
ttcaccgggctgacagatgaggacggagaaagagtcgtctcccggttaggtggaagtctg
gcgaaaggagtgaacgatatgactcacctggtgactgataaagcgagacgcactgttaag
tttttgtgcgctgttgccagaggggtgccaatcgtgactcctgattggctaaagaagtgt
ggaaaagctggccatttcctttccaccgatgaatatatattgaaagacgctgagcaggag
aaaaagtttagcttcagcctacagaagtcactgcagactgctcaaagtcaacctctttta
aagggttatgggattcacgtaaccccttctgtgatgccggaaccatctcaaatgaaagaa
atcatcatctgctgtggagcacgctacctccctaaaatgccctctgctcagaagtctgtt
caggagcacactgtggtggtgtcatgtgagcaggacagggcgctttgtgataaagcagag
agtatgtcattgcccgtggtcagcacagagttcctattgactggcattctgcagcagaga
gttgacctgcaggcctattctctcacttcttctctcaacacgtccaatcagcctgcagcc
cccaaagctgctgccaggggccgaaggaagtag

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