Garra rufa (doctor fish): 141343228
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Entry
141343228 CDS
T11039
Symbol
col14a1a
Name
(RefSeq) collagen alpha-1(XIV) chain
KO
K08133
collagen type XIV alpha
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
grf00535
]
141343228 (col14a1a)
Proteoglycans [BR:
grf00535
]
Extracellular matrix (ECM) proteoglycans
Others
141343228 (col14a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
DUF4959
VWA_3
Arylsulfotran_N
Motif
Other DBs
NCBI-GeneID:
141343228
NCBI-ProteinID:
XP_073703930
LinkDB
All DBs
Position
9:31853030..32060922
Genome browser
AA seq
1987 aa
AA seq
DB search
MAKLLKESGETSELQIARGENKAIIKDFNPRKEYSVKVIAVSGNLHSRALQGKYTAEDQS
SDGETTQPQRLKEPGPVDEGNEILGVFNLGHLCASAKWQRFEIGMAHTDLSCPVFLFRLP
SELAGFGTHNPILLSHLRFHVCNFSLELTPVSHRTRKQGVRSTWQVAEVGSDKDNALDLP
HKEEGAPGLSLKETFGVICLIESSQRTSRNRKRARAAQRLQSTAAALQQSLPRHPIAIAI
QSASCSQIEELMLISDTGALNGSLITAEVDQFVCTTSSIADIVILVDGSWSIGRINFRLV
RMFLENLVNAFDVGIDKTRIGLAQYSGDPRIEWHLNGFSTKDAVIDAVKNLPYKGGNTLT
GLALTYILENSFKPESGARSDVPKIGILITDGKSQDDVIPPAQILRSAGVELFAIGVKNA
DENELKAIASEPQETHVYNVADFSIMSTIVDGLTRKVCDGVEQQDKDIKHSSAEETASPP
QDLVTSEVTAHSFRVSWTHAPGSVEKYRVIYHPSGADSLEEIVVGGTENSVVLQNLNSLT
EYEIAVFAVYRSAASDALRGSEITLALPTVSDLEVYDVTDNSMRARWRDAEGASGYMILY
APLSSETTDERELKVDESVTDVELTGLIPDTEYTVTVYAMFGEEASDPATVQETTISLRP
PRNLRVTEVDHSSVRLNWDAVSNKVKGYRIVYMKTDGVQTSEVNLGPVTNVYLKNLSPIT
EYTVAVFALYDSGQSEALSGGFTTKLVPAPFSLMTSEVTSESFQVSWSHPARDVVLYKMA
WSPTEGGDEREMMLNGAVDSYVIQGLSPFTEYKVSLSAIYKDETESSAVVVLQNTLDWTT
EVPTTFPPTTAFVHLGVSYLWVDEETPFSIQVNWEVLDSDVEQYKVTFVTSKGDPSQWLI
WTVLVSGNRRSVILQPLLSDTRYKITVTPVYANGESTALSKTSVGKTLALSGPSNLRVSD
EWYNRFRISWDSPQFPTMGYRVIYQPISVSGPALETFVGDDVNTLLILNLLSDTEYSVQV
IASYTTGSSQPLNGKGKTLFLGVNNLSTYQVLSSSMCAQWQPHRHATLYRVVIESLLNGK
KQEVRVGGGASRQCFFNLSPNTKYKISVYTLLQDTEGPAITTMATTAPAPTQPPTAPPTT
VPPPTIPPAKEVCKAAKADLAFLVDGSWSIGDDNFQKIIRFLYSTTGALDVIGPEGTQVA
IVQFSDDARTEFKLSSYSDKEALLDAVQRITYKGGNTKTGRAIKHVKEAIFTEDAGVRRG
IPKVLVVLTDGRSQDDVNKISKEMQMEGYIIFAIGFADADYGELVNIASKPSERHVFFVD
DLDAFKKIEEQLITFVCEAATATCPSMLMSGNTLAGFRMMEMFGLVEKHYSSVQGVSMEP
GTFNSYPCYRLHKDALVSQPTRYLHPEGLPSDYTISMLFRILPETPQEPFALWEILDKNN
EPLVGIILDNGGKTLTFFNYDYKGEFQTVTFEGSEIKKIFYGSFHKLHVAISKTAAKVVI
DCKTVGEKSINAAGNITIDGVEVLGRMVRSRGSRDNSAPFQLQMFDIVCSTSWASRDKCC
ELPGLRVEEDCPAMPHACTCAQDSKGPPGPSGPPGGPGIRGSRGDRGEPGLTGPQGPPGE
IGPPGPQGPPGPQGPNGLSIQGPPGAPGEKGEKGEIGLPGPQGVPGASGGPGRDGPPGQR
GLLGKDGPQGRQGPPGPMGSPGAPGAPGPSGSPGHIGDQGPPGPPGTKGERGERGDMQSQ
AAVRAIARQVCEQLIQSHLSRYNSILNQIPSQSVSVRTVQGPPGEPGRQGPPGPQGEQGP
SGRPGFPGASGQNGRPGERGLPGERGEKGSPGIGTQGPRGPPGPPGPPGEGRTGSQGPPG
RPGIQGSSGRPGTPGSPGPAGPPGYCDQNSCIGYNVGVQQLPSNPYQNYGPATNYNNDEE
EEDPYGGYRAYPPQYYQPSYPDPRAARFGPAHPGDTLGMRSPETHRFSRSTDEEGIVDES
EVQAKAK
NT seq
5964 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagctcctaaaagaaagtggcgaaacaagcgagttgcaaattgcaaggggagag
aataaagcaataataaaggattttaatcccaggaaggagtattcagtcaaggttatagct
gtgagtggaaacctgcacagccgagcacttcagggaaaatatactgcagaagatcaaagc
agtgatggagagaccactcagcctcaaagactgaaagaacctggaccagtagacgagggc
aatgagatcttaggagtctttaatttaggacacctctgtgcgtctgccaaatggcagagg
tttgaaattggtatggctcacacagaccttagctgtcctgttttcctcttcagactaccg
tcggagttggcaggatttggcacacataatccaattttgctctctcatctgcggttccac
gtttgtaacttctcactggagctgacgccggtttcacaccgcacccgtaagcagggcgta
cgcagcacgtggcaggttgctgaggtaggcagtgataaggacaacgctctggatcttcct
cacaaggaggaaggagctccaggactttctctaaaggagactttcggagtcatatgtttg
attgagagctcccagaggacgtcccgcaaccgaaagagagctcgtgcagcccaacggctg
caatctacggcagctgcattgcagcaatcgcttccacggcatcctattgcaatcgcgata
caatcagcctcgtgctctcagatagaggagctcatgttgattagtgatactggggctctc
aatggctcactgataacagcagaagtggatcagtttgtctgcacaacttcatccatcgcg
gatattgtcatcctggtcgatggatcttggagtattgggcgaatcaatttccgtctggtt
cgcatgttccttgaaaacctggtcaatgccttcgatgtgggaatagacaaaacccggatt
ggactggcccagtacagcggagatccgcgaattgagtggcacttgaatggcttcagcaca
aaagatgcagtaatagatgctgtcaaaaacctgccgtacaagggaggcaatactctcaca
ggtcttgctcttacctacatcctggagaacagcttcaaacctgagtctggcgctcgtagc
gatgttcccaaaattggaattttaataaccgacggcaaatcccaggatgacgtcatccca
cctgctcagatcctgagaagtgctggagtcgagttatttgccattggtgtgaagaatgct
gatgagaacgagctgaaggccatcgcctctgaaccacaggaaacacacgtttataatgtg
gcagactttagtatcatgagcactatagtggatggcctgaccaggaaggtgtgtgacgga
gtggagcaacaagacaaagatattaaacattcttccgccgaagagacggcatctccaccc
caagacttggtcacgtctgaggtgactgcacacagtttccgtgtgtcctggactcatgcg
cctggcagtgtggaaaaatatcgggtgatttaccatccatccggagcagatagtctggaa
gagattgtggtgggcggcacggagaattcagtcgtcctgcagaatttgaactctctgact
gaatacgagattgctgtgttcgctgtgtaccgcagcgcagcgagcgacgctttgagaggc
agcgagatcacgctggctctaccaacagtgagtgatctcgaggtgtacgatgtgacagac
aacagcatgagagcccgctggagggatgcagaaggggcttctgggtacatgatcctttac
gctccactgagcagtgagactacagatgaaagagagctaaaggtggatgagtcggtgact
gatgtggaactgactggattgattcctgacacggagtacactgttacggtctatgccatg
ttcggagaagaggccagtgaccccgctactgttcaggagaccaccatatccctgagacct
ccacgtaacctgcgagtcactgaagttgaccacagctctgtgcgactcaactgggacgca
gtgtccaataaggttaagggctaccgtattgtgtatatgaagacagatggtgtccagacc
agtgaggtgaatttgggtccagtcaccaatgtgtacctgaaaaacctgtcacccattact
gagtacaccgttgcggtttttgctctctatgactctggccaatcagaggcactcagtggc
ggattcactacaaagcttgtgccagccccattcagcctgatgacatcagaggtgacctca
gaaagttttcaggtcagctggtcacatcctgccagagatgttgtgctctataagatggcc
tggtcacctactgaaggaggagatgaaagagagatgatgctgaatggagctgtggactcg
tatgtgattcaaggcctgagtccctttacagagtacaaggtgtcactgtcagccatctat
aaagacgaaacagagagcagtgctgtggttgtgcttcagaatacattggactggaccaca
gaagttcccaccactttcccccccactacagcatttgttcatctgggagtgagttacctg
tgggtggacgaggagacccccttcagtatccaagtaaactgggaggtgctggactcagac
gtggagcagtacaaagtgacatttgtcacatcaaagggagacccctcgcagtggttgata
tggacggtgttagtctcaggaaacagaagaagcgtgatcctgcaacctctcctctcagac
acaaggtacaagatcacagtgacccctgtttatgcaaatggagagtccacagctctatcc
aagacctcagtcggcaaaacattggcactttctggacccagtaacctcagggtgtctgat
gaatggtacaatcgcttccgcatcagctgggacagccctcagttccccactatgggttac
agggtcatctaccagcccatctctgtgtcaggtccggctctagagacgtttgtaggggat
gatgtgaacaccctgctgatcctcaatctgttgagtgacacggagtacagcgttcaggtc
atcgcctcctacactaccggctccagccaacccctcaacggcaagggcaaaacattgttt
ctgggggtgaacaatctcagcacgtaccaggtgctcagtagcagcatgtgcgcccagtgg
caacctcaccgccatgccaccctctacagagtcgtcattgaatctctgctcaatggtaag
aaacaggaagtgagggttggtggcggtgcatccagacagtgtttcttcaatctttccccc
aacaccaagtacaagatcagcgtctatactcttttacaggacacagaaggtcctgccatc
accacaatggcgacaaccgctccagcacccacccagccaccgaccgcaccacccaccacg
gtccctcctcccaccatccccccagccaaagaagtttgcaaagcagccaaggcagacctg
gccttccttgtagacggctcctggagtatcggagatgacaactttcagaagattatccgt
ttcctgtacagcacaactggcgcgcttgatgtgattggccccgagggaacacaggtggcc
attgttcagttcagtgatgatgccaggactgagttcaagctcagctcctacagcgataag
gaggctctgctggacgccgtgcagcgcatcacctacaagggaggaaacaccaagacaggt
cgagccattaagcatgtgaaggaggccatcttcactgaggacgcgggcgtaaggaggggc
attcctaaagtgctggtggtgctcacggacgggcgatctcaggatgacgtcaacaagatc
tctaaggagatgcagatggagggctacatcatctttgccattggcttcgctgatgctgac
tatggggagctggtgaacattgccagcaaacctagcgagagacatgtgttctttgtggac
gatctggacgccttcaagaaaattgaggaacagctcataacttttgtttgtgaggctgcg
actgccacttgcccctcgatgttaatgagcgggaacactttagctggcttccgtatgatg
gagatgtttggtttggtggagaagcactacagcagtgtgcaaggtgtctcaatggagcct
gggactttcaacagctacccctgctaccggttgcacaaggacgccctcgtctcccagcct
accaggtatctacatcccgaaggacttccctctgactacacaatatctatgctgttccgc
atactgcctgaaactcctcaggaaccttttgcattgtgggaaatccttgacaaaaacaat
gagccacttgtgggcattatcctggataatggagggaaaacattaacctttttcaattac
gactacaagggagaatttcaaacagtgactttcgaaggaagtgaaatcaagaagattttc
tatggcagtttccataagcttcatgtggccatcagcaaaactgctgccaaagtggtgatc
gactgcaaaacggtgggagagaaatccatcaatgccgcagggaacatcaccattgatgga
gtggaggttcttggacgcatggtccgctcacgtggaagcagagataactcagcgccattt
cagctccagatgtttgacatcgtctgcagtacatcatgggccagtcgggataagtgctgt
gagctcccaggcttgagagtagaagaggactgtcctgccatgccccatgcctgcacctgt
gctcaggatagcaaaggaccacctggaccctctggaccaccgggcggtcctggtatcaga
ggttcaagaggagatcgtggggagccaggcttgacggggcctcaagggccacccggtgag
atcggacctccaggaccacaggggccaccgggtcctcaggggccaaatggtctgtccatt
caggggcctccgggggctccaggagagaaaggagagaagggtgaaataggtctgccaggt
cctcagggtgtaccgggtgccagtggaggaccaggccgtgatggacctccaggacagaga
ggcctactgggcaaagatggaccccagggacgacagggccctccaggaccaatgggaagc
cctggagctcctggggctccaggaccaagtggatctccagggcatattggtgatcagggg
ccacctgggcctccaggcacaaaaggcgaacgaggagagagaggcgacatgcagtcccag
gccgctgtccgtgccatagcgcgacaagtttgtgaacaactcattcagagtcacttgtct
cgctacaactctattctaaaccaaattcccagtcagtctgtttcggtacgaacagtacaa
ggtccaccaggtgagcctggtcggcagggacctccagggcctcagggagagcagggtcct
tctggcagaccaggattccctggagctagtgggcaaaatggccgcccaggagagagaggt
ctcccaggagaacggggagagaaaggtagtccaggaatagggacacaaggccctcgtggt
cctccagggcccccagggcctcctggagaaggtcggacaggaagtcagggccctccaggc
agacctggaattcaaggttcctcaggacgtccaggtacccctggtagccctggtcctgcc
ggaccccctggctactgcgaccagaactcctgcattgggtacaacgttggagtacaacag
ttaccctccaacccctaccaaaactacggccccgccaccaactacaacaacgatgaggag
gaagaggacccttacggtggctaccgtgcctaccctcctcagtactaccaacccagctat
cctgacccccgtgccgccaggtttggccccgcccaccctggtgacacgttggggatgagg
tcacctgaaacgcatcgcttctcccgtagcacggatgaagaggggatcgtcgatgagtcg
gaagtgcaagcgaaggccaaatag
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