Garra rufa (doctor fish): 141343274
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Entry
141343274 CDS
T11039
Symbol
lamc1
Name
(RefSeq) laminin subunit gamma-1
KO
K05635
laminin, gamma 1
Organism
grf Garra rufa (doctor fish)
Pathway
grf04510
Focal adhesion
grf04512
ECM-receptor interaction
grf04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
141343274 (lamc1)
04518 Integrin signaling
141343274 (lamc1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
141343274 (lamc1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
EGF_LMN_ATRN
Laminin_B
Alanine_zipper
EGF_Teneurin
CCDC39
DUF6061
Motif
Other DBs
NCBI-GeneID:
141343274
NCBI-ProteinID:
XP_073703970
LinkDB
All DBs
Position
9:42170188..42207922
Genome browser
AA seq
1480 aa
AA seq
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MASETAARDVCKAFDITYVRLKFHTSRPESFAIYKRSGEDGPWIPYQYYSGSCEKTYSKN
NRGFIRTGEDEQQALCTDEFSDISPLTGGNVAFSTLEGRPSAYNFDNSPVLQDWVTATDI
KVTLNRLNTFGDEVFNDPKVLKSYYYAISDFAVGGRCKCNGHASECVKNERSKLVCNCKH
NTEGPDCNVCKPFYNDRPWRRATADNPNECLPCNCNGKSAECYFDPELYRATGHGGHCRN
CADNTDGPNCERCLDNYYRDSSGQRCLSCSCNPVGSLSTQCDNTGRCSCKPGVMGDKCDR
CQPGYHTLTAAGCRPCSCNPAGSTQECDVQTGRCQCKENVDGFNCDRCKLGYFNLDPQNP
QGCTPCFCFQHSTVCESADGYHIHKITSTFDRDDEGWKGQQRDSSSVPVQWSPTSQEISL
ISEDYFPIYFVAPEKFLGNQLLSYGQNLTLNFRIQRHDARLSAEDVVLEGAGHRVAVPLI
AQGNSYPGEETQTFVFRLHDTTDYPWRPTTKHVDFQKLLYNLTSVMIRGTYSARSAGYLD
NVSLVTARRGPGTPARWVEKCTCPQGYLGQHCEQCDLGYRRSRPELGRFSSCEPCNCNGH
SDTCDSVTGMCNCQHNTAGMSCERCKDGFYGDSTVGSSSDCKPCPCPEGATCAMVPKTKE
VVCTNCPTGTTGKRCELCDDGFFGDPLGEKGPVRACRACSCNNNIDPNAVGNCNRESGEC
LKCIYNTAGVFCDRCKEGFYGDARAANVADKCKPCSCSPYGTVDRKTTCSQVTGQCQCLN
HVINRDCSACEPGFYNLQSGKGCERCNCNPIGSTNGQCDISSGQCECQPGVTGQHCERCE
VNFFGFSSSGCKPCDCDPEGSELAQCKEDGRCQCRPGFVGARCDMCEENYFYNRSTPGCQ
QCPNCYSLVRDKVNQQRQKLHDLQNLIDNLDNTENTVSDKAFEDRLKEAEKTIMDLLEEA
QASKEVDKGLLDRLNNINKTLNNQWNRLQNIKNTVDNTGTQADRARNRVRDAENLISTAR
EELDKAKEAISKVDIKIPTTSGDPNNMTLLAEEARKLSEKHKADADQIEKIAKDANDTST
KAYNMLKKALDGENKTSSDIDELNRKYVEAKDLAKNLEKQAAKVQAEAEEAGNKALKIYA
NLTSLPTIDTKTLEEEANKIKKEASDLDKLIDKTEKEYNDLREDLRGKETEVRKLLEKGK
TEQQTADQLLARADAAKALAEEAAKKGKSTFQEAQDILNNLRDFDKRVNDNKTAAEDAMR
RIPEINATINEANEKTRRAEAALGNAAADAKEAKAKAEEAEKIANDVQKGSAKTKADAEK
AFDDTMKLDGEVNNMMDQLTAAEKELEKKKAEADADMMMAAMASDNAKEAEGNARKAKNA
VRTVLNTINELLGQLGNIDKVDLSKLNQIDNALKDAKDKMAGSELDKKLKELNDIAKSQE
DMISDYDRQIREIRADIANLNDIKNTLPEGCFNTPSLERP
NT seq
4443 nt
NT seq
+upstream
nt +downstream
nt
atggcctcagagactgctgcaagagatgtgtgcaaggctttcgacatcacctatgtgcgt
ctaaagtttcacaccagccgtcctgagagctttgccatctacaaacgcagtggtgaagac
gggccctggattccctaccagtattacagcggctcctgcgagaagacttacagcaagaac
aatcgtggcttcatccgcaccggtgaggatgagcagcaggctctgtgcacagatgagttt
agcgacatctcaccactcaccggaggaaacgtggccttctctacgcttgagggccgaccc
agcgcatataattttgacaacagcccagtactgcaggattgggtgactgccactgacatc
aaagtgaccctgaacagattaaacactttcggagatgaggttttcaacgatcccaaagtt
ctcaaatcctactactatgctatctctgactttgctgtgggaggaaggtgcaagtgtaat
gggcatgccagcgagtgtgtgaagaacgagcgcagcaagctggtgtgtaactgcaaacac
aacacagagggaccagattgcaacgtgtgcaagcccttctacaatgaccgtccctggagg
agagccaccgctgacaaccccaacgagtgtctgccttgtaattgtaacggaaagagcgct
gaatgttactttgaccctgagctgtatcgtgccactggtcatggaggtcactgtcgtaac
tgtgccgacaatacggatgggccgaactgtgagcgatgcctggacaactactacagagac
tcctccggccagcgctgtctctcctgtagctgtaaccctgttggttctctcagcacccag
tgtgataacactggcagatgtagctgtaagccaggagtgatgggagataagtgtgacaga
tgccagcctggataccacacactgactgccgcaggctgcagaccctgctcttgtaatcca
gccggaagcacacaggagtgtgatgtccagaccggacgctgccaatgcaaggaaaatgtg
gatggattcaactgtgacaggtgtaaactgggatactttaatctggacccccagaatcct
cagggatgtactccatgcttctgcttccagcattccaccgtgtgcgaaagtgccgatggc
taccacatacacaaaatcacctccacctttgacagggatgacgaggggtggaagggacag
cagagagacagctctagcgttcctgtacagtggtcacccacctctcaagagatctcgctc
atctctgaagactatttccccatctacttcgtggctccagagaaatttcttggtaatcag
ctgctgagctatggtcaaaacctcacgctgaacttcaggattcagcgacatgatgcacga
ctgtcagcggaggatgttgtgctggaaggggctgggcatcgtgttgctgtgccacttatt
gcccagggaaattcctacccaggagaggagacacaaacctttgtgtttagactccatgac
accactgactatccttggagacccaccacaaaacacgttgacttccagaaacttctgtac
aatctgacttcagtcatgattcgtggaacctacagtgcaagaagtgctggttatttagac
aacgtgtcccttgtgactgcccgccgtggccctggaactcctgctcgttgggttgagaag
tgtacatgtcctcagggttacttggggcagcactgtgagcagtgtgatctgggatatagg
aggagccgacctgagctgggccgctttagcagttgcgagccatgcaactgcaatggacac
agtgacacttgtgactctgtgacaggaatgtgtaactgccaacacaacactgccggcatg
agctgcgagagatgtaaagacgggttttatggtgactctacggtcggctcttcttcagac
tgtaaaccctgtccctgccctgaaggtgccacgtgtgccatggtgcccaagaccaaagag
gtggtctgtacaaactgccctactggaaccacaggcaagagatgtgaactatgtgacgat
ggcttcttcggagaccctcttggtgaaaaaggtccagtcagagcatgccgtgcctgcagc
tgcaataacaacatcgaccccaatgctgtgggcaactgcaaccgagagtcgggtgaatgc
ctcaagtgcatctacaacactgctggagttttctgcgaccgttgcaaagaaggtttctac
ggcgatgcccgtgctgcaaatgtagctgacaaatgcaaaccatgctcgtgctctccatac
ggtacagtggacaggaagaccacctgttctcaggtgacgggccagtgtcagtgtcttaac
catgtcattaacagagactgcagtgcatgtgagcccggtttctacaacctacagagcggc
aagggctgtgaacgatgcaactgcaatcctattggctccacaaatggccagtgtgatatc
tctagcggccaatgcgagtgtcagcctggagtcactggtcaacactgtgagcgctgtgaa
gttaacttctttggattcagttcatcgggttgcaaaccttgtgactgtgacccagaaggc
tcagagttggctcagtgcaaggaagatgggcgttgtcagtgtcgtccaggctttgtggga
gctcgctgcgacatgtgtgaggagaactacttctacaaccgctccacaccaggttgccag
cagtgtcccaattgttacagcctggtcagagacaaggtgaaccagcagagacagaagctt
catgacctacagaatttgattgataatctggacaacactgaaaacacagtgagcgacaag
gcctttgaggacagactgaaggaggcagagaaaacaataatggacttactggaagaggct
caggctagcaaagaagtggataaaggccttttggaccgtctaaacaatattaacaagact
ctgaataaccagtggaaccgactgcagaatatcaagaacacagtggacaacacagggaca
caggcagatcgagcacgtaaccgagtccgtgatgcagagaatctgatcagcactgctaga
gaagagctggacaaagccaaggaggccatcagcaaagtggacattaaaatacccacaacc
tctggagatccaaacaatatgacacttctggcagaagaagcccgcaaactgtctgaaaaa
cataaagcagatgcagatcagattgagaagattgcgaaggacgccaatgacacttctact
aaggcctataatatgttgaagaaggcactcgatggcgagaacaagacaagcagcgatatt
gatgaactcaacaggaaatatgttgaagcaaaggatctggctaagaacctggagaaacag
gctgcgaaagtacaggctgaagcagaagaggcaggaaacaaagctctgaagatctacgct
aacctgaccagcttacccacaattgacaccaaaacattagaggaggaggccaataagata
aagaaggaggcatcggatttggacaaactgatagacaagactgagaaagagtataacgac
ctgagagaggacctgaggggcaaagaaacagaggtccgcaaactactggaaaaaggaaag
acagagcaacagacggctgatcagttgttggcacgtgcagatgcagcgaaggctttggct
gaggaggcagccaaaaaaggcaaatctaccttccaagaggcccaggacatactgaacaac
ctcagagattttgacaagcgagtgaatgacaacaaaactgctgctgaggatgccatgagg
cgaatcccagaaatcaacgcgacaatcaatgaagccaatgagaagacgcgacgggccgag
gcggctttaggcaacgcagctgctgatgctaaagaagctaaggcaaaggcagaggaagct
gagaaaattgctaacgatgtgcagaagggttcggcgaagacaaaggctgatgcagaaaaa
gcttttgatgacactatgaaactggatggagaggtgaacaacatgatggaccagctcaca
gctgctgagaaagagcttgagaagaagaaggctgaggcggatgctgacatgatgatggcg
gccatggcatctgataatgctaaagaagctgaaggcaatgccagaaaagccaaaaatgct
gttaggacagtgctgaacacaatcaatgaattattaggccagcttggcaacatcgataag
gtggatctgagcaagctgaatcagatcgataacgctcttaaagatgccaaggacaagatg
gcaggcagcgagctggacaagaagctgaaggagctgaacgacattgccaagagccaggaa
gacatgatcagcgactacgaccgtcagatccgcgagatccgagcggacatcgccaacctc
aacgacatcaagaacactctgccagaaggctgcttcaacactccgtctctagagcggcct
taa
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