Garra rufa (doctor fish): 141343595
Help
Entry
141343595 CDS
T11039
Symbol
chd8
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
grf Garra rufa (doctor fish)
Pathway
grf04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
141343595 (chd8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
grf03036
]
141343595 (chd8)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
141343595 (chd8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
DEAD
HDA2-3
Chromo_MIT1
HTH_Hrp3
MUN
Motif
Other DBs
NCBI-GeneID:
141343595
NCBI-ProteinID:
XP_073704265
LinkDB
All DBs
Position
10:complement(15637265..15658442)
Genome browser
AA seq
2565 aa
AA seq
DB search
MADPIMDLFDDTPLFNLDSLPEDAFSQGSSDPVEEALKLALGQVDPPTDPGVPVLSDVVT
DPAIIQTPVAAPISVPLQTLQTQQPTQMSHEVSIAPASISVQPSLSVASNSSGAATVLLS
SPLGVPVSGAQVTTQQLQTQQITVTQQAGQAAPKIVIFKGPQGQTQVLQGVTGATGSPGK
VTLARVLTGTPLRPGMAVVSGGTVLNATSPGQGQVKVGTGVQRLVQTANGPMKQVLLTSV
PQTQTQVQSQQVQVQIPAQTQLQSPSQPAQVQMQPQTQVTLQAQVQTQDQAPATTSPGTA
TAAVRPQGVTLSAVSQQGEPKRITLVLQQPSQGGGAQAGTVTVGGTAAAGAGQQGQQPRL
VLGSLPGKLVLQGGQLAALTQAKAGQTGAQPKVLTIQLQVQQQPNQQGAKFQLVSGAANA
GGSPQVVQISQGQGGQRLAVPLKLLLQPQSNTVSSAGGAVSVVKVITTSAAGSASSTTTT
AVSSGVRLAKVQEPVRRVETLCKQEKANRIVAEAIARAKARGERNIPRVLNQDELPAGQT
SADLEGTPGAAGAKKKGGGGGGGGGGASSSGGSKKKSPIAGGKVVVGGDKKSKAKTPGVV
SGGGGSKSKSKTKLNTITLVGGKKRKRNASSDHSDVDLSPPVSPRTLEEEMSQKRRSNRQ
VKRKKYTEDLDIKITDDEDEMDADVDVTTTPVTSAGHLQSMGAELQHELDGDGLPSMQFF
VENPSEEDAAIVDKILSMRVTKKEVCPGQYTNVEEFFVKYKNYSYMHCEWASLDQLERDK
RIHQKLKRFKTKQAQMRNLLLEDEEPFNPDYVEVDRILDESHSVDKDNGEPVVYYLVKWC
SLPYEDATWELKEDVDEGKVDEFRKIESRPARLKRTPRPAASAWKKLDESREYKNGNQLR
EYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIALLSEVFAVGVQGPFLIIAPLSTIT
NWEREFSTWTDMNAIVYHGSLASRQMIQQYEMYCKDDKGHLIPGAYKFDALITTFEMILS
DCPELREISWRCVVIDEAHRLKNRNCKLLDSLKMLDLEHKVLLTGTPLQNTVEELFSLLH
FLEPTQFPSEIEFLREFGDLKTEEQVQKLQSILKPMMLRRLKEDVEKNLAPKQETIIEVE
LTDVQKKYYRAILERNFSFLSMGATHNSNVPNLLNTMMELRKCCNHPYLITGAEEKIVAE
LREVYDPLAPDFHLQALVRSAGKLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLIH
KRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCVIFDSDW
NPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMLDKASLKLGLDRAVLQSMSGNKDS
SVNGIQQFSKKEIEDLLRKGAYAAIMDENDEGSRFCEEDIDQILQRRATTITIESEGKGS
TFSKASFVASENRTDIALDDPEFWQKWAKKADIDMDTLNRKNTLVIDTPRVRKQTRQYSS
LRGEGGDLSDMDSDDDYPPHNSRQSRASRRSDRHSGGGYGRTDCFRVEKHLLVYGWGRWR
DILSHARCKRRLSERDVETICRVILVFCLIHYRGDENIKSFIWELITPPENGREPQALLN
HSGLSIPVPRGRKGKRVKAQSSFDVQKVEWIRKYNPDSLLLDDSYRKHLKHQCNKVLLRV
RMLYYLKQEVIGEHADSVLRGADARDIDIWLPEMEQQDVPSGWWDAEADRCLLIGVYKHG
YEMYTTMRADPCLCFVERCGRPNEQDINAEQQAADPELGEGGDYDKYSEDPEFKPATRHT
KEVYEEADSVNADGEICVEDRSAPVQVEGPSSGSSDLCYWPTSSSLTARLRRLITAYQRS
YRREQLKMEAAEKGDRRRRRCEQATKLKEIARQERQQRWTRREECDFYRVVSTFGVERIK
KEGDAPEGDEHHMDWNNFRSFARLDKKTDESLTRYFKCFMSMCRKVCHLRPARAEESQDL
SQSLAPITEERASRTLYRVSLLCRLRERVLTHPSLEERLSLAPPSSDLPNWWSIPLHDHE
LLLAAARHGVSRTELSIFSDPQYSFSQARLDYLQNQQAQAASQIHVLSQSQDPTGIKEES
LDDESRLLGVEALCPSDSPAMLLSHSEGKVGVQAGWSWKKSKNNGPSERKERGEGPSDSD
SDSDSGSSSSSHHSGSSDDSGDSDNEREQAAALKMCDGDEENSLLSLTPSQEGAPPESLT
DPLRVDWPKDRVLINRIDNLCSLVVMGHWPSGRRYVSDIQLNVTSEEPDLIDDVGYPRVA
RKSNSSLSAEALEGQESEFTVKLLKEEGLKLTFSKQALMPNGEGSARKKRKDHELEDSEG
VLHAPRRRDLPNWLKENPDYEVEGDMLELLVNRTKRKRRRKRVEKGAALTGSERVKVIDM
RTGKKFGGIYGPLLQDLREHLEENPDHVVASEWSETVRNSGFLPESLFHRLLSPHASIPK
KNRHYLSTPSLQTDDPLLGGGEGETLVSDGAYMMDDEDLEDGGHLTSSHHFLTPAYDVKM
EPSALDMDGGDSLSQGGYDSSDREAILDDVIMAPKNSDSSSSSED
NT seq
7698 nt
NT seq
+upstream
nt +downstream
nt
atggcagaccccattatggacctctttgatgacacaccactgttcaatttggattcccta
ccggaggatgcgttctcccagggctcctcagacccagtcgaggaggcgctgaagttggca
ctgggccaagtggacccacctacggaccctggtgttcctgtgctcagtgatgttgtcaca
gatccagctataatccaaacacccgtcgcagctccaatctccgtcccactgcagaccctt
caaacacagcagccaacccagatgtcccatgaggtttccattgccccggcttcaatatcc
gttcagccctctctctctgtggccagtaatagcagtggggcagcaacggtcctgctgagc
tcccctcttggagtacctgtgtcaggggctcaagtcaccacccagcagctgcagactcag
caaatcactgttacgcaacaggcagggcaggcagccccaaaaattgtaattttcaaaggc
cctcagggtcagactcaagtgctacagggtgttacaggggccacaggctctccagggaaa
gtcactctcgctagagttctgacagggaccccgcttaggccagggatggcagttgtttct
gggggaacggtattaaatgcaacatctcctgggcagggacaggtcaaagtgggcactgga
gtccaaaggctggttcagactgcgaatggcccgatgaagcaggtcttactgacctcagtg
ccccagactcaaacacaggttcagtcgcagcaggtccaggtgcagatacctgcacagacg
cagctgcagtcaccttcacagccagcacaggtccagatgcaacctcagacgcaggtgaca
ttacaagcccaagtacaaacacaggaccaagcgccggctactacatcccctggaacagca
acagcggccgtccgacctcaaggtgtcacactttcagcagtgtcacagcagggggaaccg
aagaggatcactctggtgctacagcagccctcgcaaggtggaggggcccaggctgggaca
gtaacagtagggggaactgcagctgctggggcgggtcagcagggccagcagcccaggctg
gtgttgggctctctgccagggaagttggtcctgcagggaggccagctggcagctctcacc
caagccaaggcaggtcaaacgggtgcacagccgaaagtgctcaccattcagctgcaagtt
caacagcagcccaaccaacagggagccaagtttcaattggtttctggggcagctaatgcc
ggtggcagccctcaggtggtgcagatttctcaaggccaaggaggacaaagactagcagtg
cctcttaaactactgctgcagccacagtcaaacactgtttccagtgctggcggggccgtt
tctgtggttaaagttatcactacctcggctgccggctctgcgtccagcaccaccactaca
gctgtgtcttccggtgtgcgtttggcaaaggtccaggagcctgtgcgaagagtggagacc
ctgtgcaaacaagagaaagcaaatcgcattgttgctgaggctatcgcacgggccaaagcc
aggggcgaaaggaacatcccccgtgtgctcaaccaggatgaactgcctgccggacagacc
tctgcagacctggagggtaccccaggggctgcaggagccaaaaagaaaggaggaggagga
ggaggaggtggtggtggtgctagtagtagtggagggagcaagaagaaaagcccaattgca
ggagggaaagtggtggtgggaggagacaagaaatccaaggcaaagactccaggagtggtt
tctggaggcggaggcagtaaaagtaaatccaagacgaagctaaacaccatcactcttgtg
ggtggtaagaaaaggaaaagaaatgcatcctctgaccattcagatgtagatctaagccca
cctgtttcaccccgcacactggaggaggaaatgtcacagaagcggcgttctaaccgtcaa
gtgaagcggaagaagtacacagaggatttggacattaaaatcacagatgatgaagatgaa
atggacgcggatgttgacgtaaccacaactcctgtgactagtgcagggcatctccagtct
atgggcgcagaactccagcatgaactggatggggatggtcttccaagcatgcagtttttt
gtggagaacccaagtgaggaggacgctgctattgtggataaaatattgtcaatgcgggtg
accaaaaaggaggtgtgtccagggcagtatactaatgtggaggaattttttgtcaaatat
aaaaactactcgtacatgcactgtgaatgggccagtcttgaccagctggaaagagacaag
aggatccatcagaagctaaagagattcaagacaaaacaggcacagatgaggaacctattg
ctagaggatgaggaacctttcaatccagactatgtggaggttgaccgtattttggatgaa
tctcacagtgttgataaagacaatggggagccggttgtgtactacttagtgaagtggtgc
tctctgccctatgaagatgctacttgggagctgaaagaggatgttgatgaaggaaaagtg
gacgaattcaggaagattgaaagccgcccggccagactcaaaagaactcctcgacctgct
gcaagtgcctggaagaagcttgatgagtccagagagtataaaaatgggaaccagctccga
gagtaccagctggagggcgtcaactggctgcttttcaactggtacaacaggcaaaactgc
atcctggcagatgaaatgggtctggggaagactattcagtccatagccctgctgtcagag
gtgtttgctgtaggagttcaggggccgttcctcatcattgcccctctatccactatcaca
aactgggagagagagttttccacctggactgatatgaatgctattgtttaccacggtagt
ctggccagcagacagatgatccagcagtatgaaatgtactgcaaagatgacaagggacac
ttgataccaggggcctataaatttgatgctctgatcacaacctttgagatgattctctca
gattgcccagagctgagggagatttcttggcgctgtgttgttattgatgaagctcaccgt
ttgaagaacagaaactgcaaactcctagacagcctcaagatgcttgaccttgagcataaa
gtgttgttgacaggcactccacttcaaaacacagtggaggagctgttcagtctgctgcac
tttctggagccgacccagtttccctcggagatagagtttttgcgcgagtttggagatctt
aaaacagaggagcaggtccagaaactgcagtcaattctaaagcccatgatgctgcgtaga
ctgaaagaagatgtggaaaagaacctagccccaaaacaagagaccattattgaggtggag
ttgactgatgtacagaagaagtattaccgtgctattctagaacgtaacttcagcttcctt
agcatgggagccacacacaacagcaatgtacccaatctcctcaacacaatgatggaactt
cgaaagtgctgcaaccacccttacctcattacaggtgctgaagagaagatagtggctgag
ctgagggaggtgtatgatcctctggctccagactttcatctccaagctctggtgcgctct
gcagggaaactggtcttgctggataagctgcttcctcgccttaaggctggcgggcacaag
gtgctcatcttctcacagatggtgcggtgcctcgacatccttgaggactacctcatacac
aagagatacctgtatgagcgcattgacgggcgggtcagaggaaacctgcgacaagcggcc
attgatcgctttagtaaacctgattcagaccggtttgtcttcctgctttgtacccgggct
ggaggtttgggcattaatctgactgctgctgacacctgtgtcatttttgactctgactgg
aacccacagaatgatcttcaagctcaggcacgttgtcatcgtattggtcaatctaaagcg
gtgaaggtttatcgtctcattaccagaaactcctatgagagggagatgttggacaaagcg
agtcttaaactgggacttgatcgagctgttctgcaaagcatgagtggaaataaggatagc
agtgttaatgggatccagcaattctcgaagaaggagattgaggatttgcttcgtaaaggt
gcttatgcagccattatggacgagaacgacgagggcagccgtttctgtgaggaggacatc
gatcagatacttcagagaagagcaactaccatcactatagagagtgaaggcaaaggatcc
accttctccaaagccagctttgtggcatctgagaaccgcacagatattgctctggatgat
cctgagttctggcaaaagtgggccaagaaagctgacatagatatggacacactcaacagg
aagaatactcttgtgattgacacaccaagagtaagaaagcaaacgcgtcagtattccagc
ctgcgtggagagggtggtgatctgtctgacatggacagcgatgatgactacccaccccat
aattcccgacaatctcgggcttctcgacgctcagatcgacattctggtggtggttatggg
cgcacagactgcttcagagtggaaaaacacctacttgtttatgggtggggccgctggcgg
gatatcctgtctcacgctcgctgtaagaggcgtctcagtgaacgtgacgtggaaaccatc
tgccgtgtcattctggttttctgtttgatacattaccgtggagatgaaaatatcaagagc
ttcatctgggagctaatcacccctccagagaatggacgagaaccacaggctctgcttaat
cactctggtctgtccatccccgtccctcgtggcaggaaggggaaacgagtcaaggctcag
agctcttttgatgtgcagaaggttgagtggatccgaaaatataatcctgacagtcttctg
cttgatgacagttaccgaaaacacctcaaacaccagtgcaacaaagtattgctgagagta
cgtatgctgtattacctgaagcaggaggtcattggggaacatgctgattctgtattgaga
ggagctgatgcaagggatattgatatctggttgcctgaaatggagcagcaggatgttccg
tctggctggtgggacgcagaagctgaccgatgcttgcttatcggtgtctataagcatggg
tatgagatgtacaccactatgcgtgctgacccctgcttatgttttgttgagagatgtggc
cgtccaaatgaacaagacattaacgcagagcagcaagcagcagacccagagcttggggaa
ggaggggactacgacaagtactcagaagatccagaatttaaacctgcgacaagacacacc
aaggaggtatatgaggaggctgattctgtgaatgctgatggtgagatctgcgtggaggat
cgctctgcccctgtgcaggttgaggggccatcttcgggatcatcagatttgtgttactgg
ccaacaagctcgtcgctcacagccagactacgccgtcttatcacagcctaccaacgcagt
tacagacgagagcagcttaagatggaagcagcagagaagggcgaccgtagacgtaggcgc
tgtgaacaagccacaaagcttaaagagatagcccgacaagaacgacaacaaaggtggact
cgtagggaggagtgtgatttttacagggtggtatcaacctttggagtcgaaaggataaag
aaagagggagatgctccagaaggggacgagcatcacatggactggaataatttccgttct
tttgctcgccttgataagaaaaccgatgagagcttgacacgttacttcaagtgcttcatg
tccatgtgtcggaaagtgtgtcaccttcggccagcacgtgcagaagaatctcaagatttg
tctcagtctctggctcccatcactgaagaacgagcctcacgcacactttacagggtcagc
ttgctgtgtcggctacgtgagcgcgttcttacccacccgtcgttggaggaacgcctcagt
ctggcaccaccctcctctgatctccccaactggtggagcattccactgcacgaccacgag
ctgctcttagctgccgctagacatggcgtcagccgcactgaactctcaatcttctctgac
ccacagtactcattcagtcaggcccgcctcgactacctccagaaccagcaagcccaagca
gcttcgcagattcacgtgttaagtcagtcacaggatccgactggtatcaaagaggagagc
ctagatgatgagtctaggctgctgggggtggaagccctctgtccgtcagactctccagcc
atgctcctctcccattctgaggggaaagttggggttcaggctggatggagctggaagaag
agcaaaaataatgggccgagtgagagaaaagagaggggtgaagggccttcagactccgat
tctgattcagactctggctcgtcttcctcgtcccatcattctggcagctcagatgatagc
ggagacagtgataacgagagagaacaagcagcagctcttaagatgtgcgatggtgatgaa
gaaaacagcctcctctcactcacaccgtctcaagaaggcgccccacccgagtccctcact
gacccactgagagttgattggcccaaagaccgtgtgttgataaaccgaatagacaacctt
tgctcattggttgtaatgggtcactggccatcaggtcgacgatacgtctctgacatacag
ctcaacgttacatctgaagagcctgacctcatagatgatgtaggttacccccgagtggca
cgcaaaagcaacagttccctgtctgcagaagctcttgaaggccaagaatcagagttcaca
gtaaaactcctaaaggaggaggggttgaagttgactttttcgaagcaggctctcatgcca
aatggtgaagggagtgcacgcaaaaagagaaaggaccacgagctggaagattccgaaggg
gttctccatgctccccgcagaagggaccttcctaactggctcaaagaaaacccagattat
gaagtggagggagacatgttagaattactggtgaaccggaccaaaaggaagaggaggagg
aagagggtagaaaaaggagcagcacttaccggcagtgagagagtgaaggtcatagacatg
aggacaggcaagaagtttggtggaatatacgggcctttactacaggacctgagagagcac
ctggaggagaatcctgaccacgttgtagcatcagaatggtctgagactgttcgtaactcg
ggcttcttgcctgagagtttattccacagactgttgagtccccacgcctcaatccccaaa
aagaatcgacattacctctccaccccttcgctccagaccgacgaccctctcctgggaggc
ggcgaaggcgagacgttagtttccgacggcgcgtacatgatggacgacgaggacctggag
gacggcggtcacctcacatcatctcaccacttccttactccagcctacgatgtgaagatg
gagccgagcgctcttgatatggacggaggcgacagtttgtcacaaggtggctatgatagc
tcagacagagaggccattttggatgacgtcatcatggcaccgaagaattcagactcttcc
tcgagctctgaggattga
DBGET
integrated database retrieval system
