Garra rufa (doctor fish): 141343707
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Entry
141343707 CDS
T11039
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf03013
Nucleocytoplasmic transport
grf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
141343707
03015 mRNA surveillance pathway
141343707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141343707
Enzymes [BR:
grf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
141343707
5.6.2.5 RNA 5'-3' helicase
141343707
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
141343707
mRNA cycle factors
Common to processing body (P body) and stress granule
141343707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
141343707
NCBI-ProteinID:
XP_073704436
LinkDB
All DBs
Position
10:complement(4047887..4081469)
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AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLPNGDDAVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSSTGRPSNMYFQTHDQVGMIGTGPNPLGSMN
IPIPFNLVMPPMPPPGYLGQVNGPAAGRGAPKGKTGGRGGRQRNRGTGNHGSGQANMPNS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcgcagacgctcaccttcctggacacggaggaa
gcggagctgctcggggccgacacgcagggctccgagttcgagttcaccgactttacgctg
cccagccagacccaaacgcagggccagacccagagtcaactcgacaaccaggtgaacgga
cctgatggcgttctgcccaacggagatgatgcagtggtgaaaaccagccaacttctggct
gaactgaactttgaagaggatgaggaagatacttactacactaaagacctgccggtgcac
gcctgcagctactgtggcatccatgatccagcatgtgtggtctattgcaacaccagcaag
aaatggttctgcaacggccgcggtaacacctctggcagtcatattgtgaaccacttggtg
agggccaaatgtaaggaggtgactctgcataaggacggaccgctgggagagacggttctg
gagtgctacaactgcggctgccgtaacgtcttcctgctcggcttcatcccggccaaagca
gactctgttgtggtgcttctgtgcaggcagccgtgtgccagtcagagcagtctgaaggac
attaattgggacagctctcagtggcagcccctcatccaggaccgctgcttcctatcctgg
cttgtgaagatcccgtccgagcaggagcaactgagggcccgtcagatcacggcacagcag
atcaacaaactcgaggagctctggaaggaaaacccaacagcaacgctggaggatttggag
aaaccaggagtggatgaggaacctcagcacgttctgctacgctacgaagatgcctatcag
taccagaacatctttgggcctctggttaaactagaggctgactatgacaagaaactcaaa
gagtcccaaactcaagacaatataacagtgaggtgggatttgggactgaataaaaagcgg
atagcttatttcactctgcccaagacggattcaggtgacatgcgactgatgcaaggagac
gagatctgtctgcgctataaaggagacctggctccgctctggaaggggatcggacacgtc
atcaaagtcccggacaattatggagatgaaatcgccattgagttgcgcagcagtgctggt
gcacctgtggaggtgccgcataacttccaggtggactttgtttggaagtcaacatctttt
gaccgcatgcagagtgccctgaagacgtttgctgtggatgagacttctgtgtccggctat
atctaccacaagttgctgggtcatgaggtggaggacgttatcatcaaatgccagctgccc
aaacgcttcactgctcagggcctgccagacctcaaccactcgcaggtttatgccgtgaag
acggtgctgcagcgacccctcagtttgatccaggggcctccaggaaccggaaagactgtc
acctctgccaccatcgtctaccatctggccagacagggcaatggtccagtactggtttgc
gctccgagtaacatcgcggtggaccagctaaccgagaagatccatcagacggggctgaag
gtggttcgtctgtgcgctaagagtcgtgaggccatcgattcacctgtgtctttcctggct
ctgcacaatcagatccgcaacatggacagcatgccagagttgcagaaactgcagcagctg
aaggacgaaactggcgagctgtcgtcatctgatgagaaacgctaccgagctcttaaacga
accgctgagagagagctgctcatgaatgcagatgtgatctgctgcacatgtgtgggtgca
ggtgaccctcgcctggctaagatgcagttccgctccatcctcattgatgagagcacacag
gccacggagcccgagtgcatggtgccagtggtgctcggggccaaacagctgattctggtg
ggtgaccactgtcagctgggtcctgtggtcatgtgcaagaaggcggctaaagcgggtctg
tcccagtctctctttgagaggctggtggtgctgggcatcagacccatccgtctgcaggtg
cagtaccgtatgcacccggcgctcagcgctttcccgtccaacatcttctacgagggctct
ctgcagaacggtgtcaccgctgctgatcgcatcaagaaaggctttgacttccagtggcct
cagcccgataagcccatgtttttctacgtaacccagggccaggaggagattgcaagctct
ggcacctcttatctcaacaggactgaggctgctaatgtggagaagatcaccactcgtctg
ctgaaggccggagccaaacctgaccagattggtatcattacaccatacgagggtcagcgc
tcttacctggtgcagtacatgcagttcagcggctcactccacaccaaactataccaggag
gtggagatcgccagcgtggatgctttccagggcagagagaaggacttcatcatcttgtct
tgtgtcagagctaacgagcaccagggcatcggcttcctgaacgaccctcgtcgtctcaat
gtggcactaaccagagccagatatggcgtgatcattgtgggcaatcctaaggctctgtcc
aagcagcctctgtggaaccacctgctgaactactacaaggagcagaaggttctggtggag
ggacctctgaacaacctgagagagagccttatgcaattcagcaagccacgcaagctggtc
aacaccatcaaccctggagcccgtttcatgagtaccgccatgtatgatgcgagagaggcc
atgattcctggatctgtgtatgatcgcagcagcactggacgtccatctaatatgtacttc
cagacccatgaccaggtcggcatgatcgggactgggccaaacccgttgggatccatgaac
atccccatcccgttcaatctggtcatgccacccatgcctccgcctggctacctaggccag
gtgaacggaccagctgcaggtcgtggtgctcctaaaggtaagaccgggggtcgtggaggt
cgccagaggaaccgtggcaccggtaatcacggcagcgggcaggccaacatgccgaacagc
caggccagtcaggatctggtgtctcagcccttctctcagggtccactgacccagggctac
atcaccatgagccagccgtcacagatgagccagcctggactgtcccagcctgagctctca
caggacagctacctgggagatgagttcaaatcccagatggatgtggcgctttcccaggat
tccacctaccagggcgaacgggcatatcaacacggaggagtgactggactctcacagtac
tag
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integrated database retrieval system
