Garra rufa (doctor fish): 141344041
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Entry
141344041 CDS
T11039
Symbol
rc3h1b
Name
(RefSeq) roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
grf03000
]
141344041 (rc3h1b)
04121 Ubiquitin system [BR:
grf04121
]
141344041 (rc3h1b)
Transcription factors [BR:
grf03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
141344041 (rc3h1b)
Ubiquitin system [BR:
grf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
141344041 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
zf-CCCH_UNK
Prok-RING_4
zf_CCCH_4
FYVE
NS3_helicase_C
DUF2570
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Kinesin_assoc
Motif
Other DBs
NCBI-GeneID:
141344041
NCBI-ProteinID:
XP_073704862
LinkDB
All DBs
Position
10:41528463..41559467
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AA seq
1108 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAINTD
IEQLPVNSALLQLVGGQVPKQQPVALITCPEDTKHYDEARQCVEELALYLKPLSSARGVG
LSNAAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADTQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARVPCTPGLLPDEVVQLEPGRKASAL
TNGGPLPQLIPRGPTDPSTYDLLLKPKMDATSLSAPGSPPDSLDKSSLALTPHPVPHPRA
EHLPMPKQVSVVPRGAPQMYPQQQPELFYSEPARPPPSGSQYDAQYPTGNPYPYQPPQYV
PPRYIRNPPPPGESAVPSYPEPYPGYGPDRQYPSHHSGPPFSAHTYAPPSHYSRRHGHYP
APPPPFAPPRDDLVRMSPVPLDVPPAAMPPPPGGAAGSLYHPQEASSRDRYPPDGYYHAG
PHPSQMRSHIGDPYSRSQPSLDDLHRRRKELLVQLEERKVISPPPFAASPTLPTHPFPND
YPREYLEDGSKAFGSREPDYAGQYSPWSCDTIGSYIGSKDAKPKDVSSAVEMMNAEGKVL
REPPLDTQRRSAEAKDDDPIIPFGPLPTVSPFGAISRTSKTGYQTTGPVQAIASSQASGS
KHMTMTADYPYGNHSGWGGASYPQHQSINSQGHFSERLPVSAPDREQLKIELQQVNQQIS
QQTRGMEAASNSMLLQREACALASQPAAGVKWSSGSAVSSEQLSMELDHVELEIKKRTRE
IAMENQVAHEYKLKATENGQPDRKAQLEELSLALGEVSNGSSGMKPASSMGGSMLSLTNK
TSSLTLCSADQAASSSDLQKNGVVHSCS
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacagagtttctactgtgccccatatgcacccagacg
ttcgaggagacggtgcgccggcccatcagtctgggttgtggccacaccgtttgcaagatg
tgcctcaacaagctgcaccgcaaggcttgtccctttgaccagacggccatcaacactgac
atcgagcagctgcccgtcaactcggcgctgttacagctggtcgggggtcaggtgcccaaa
cagcaacctgtggcgctcattacgtgtccagaggacaccaagcattatgatgaggcacgg
cagtgcgttgaggagctggccctctacctcaaacccctcagcagtgcacgaggagtgggg
ttaagtaatgctgctcagagcatgctgagccgccccatgcagaggaagctggtgactctg
gtgcactgtcagctggtggaagaggaaggacgggtcagggccatgcgggcagcccgttct
ctgggcgaaagaactgttactgagctcattctgcagcaccaaaacccccagcagctctcc
tccaacctgtgggctgctgtcagagcaagaggctgccagttcctaggacccgccatgcag
gaggaggcactaaagctggtgctgttggccttggaagatggatctgctctttccaggaaa
gttctggtcctctttgtggtccagagactggaaccaagatttcctcaggcctccaaaacc
agtattggacatgtagttcagctcctataccgtgcctcctgcttcaaggtgactaagcgg
gatgaggattcatcgctaatgcagttgaaagaggagttccggacatatgaggcacttcgg
cgagaacacgactctcagatcgtacaaatcgcaatggagggggggctccgcatcgccccc
gatcagtggtcttctttgctgtacggagaccagtctcataagtcccacatgcagtccatc
attgacaagttgcagaccccagcgtcatttgctcagagtgtgcaggagctgaccatcgca
ctgcagagaacgggtgaccctgctaatctcaaccggctgagacctcacctagagttgctc
gctaacattgaccccagtccagatgctcctcctcctacctgggagcagctggagaaggga
ctggtggcggtaaagacggttgtgcacggcctagtggactttatccagaaccacagcaag
aagggtgccgacacgcagcagccaccccagcacagcaaatacaagacgtacatgtgcaga
gacatgaagcagaaaggaggctgcccaagaggagctagctgcacttttgcccattcgcag
gaggagctggaaaagtatcgtaaaatgaacaaacgtcttgctgcacgagtgccctgcacc
cctggcctgctccctgatgaggtggtccagctagagcctggacgaaaggcctctgccctt
accaacggtggccctcttccccagctcatccctagaggacccaccgacccctccacatat
gacctcttactcaagcccaagatggacgccactagcctgagtgctcctgggtctccaccc
gactctttggataaatctagcttggctctgacaccacaccctgtgcctcaccccagggcg
gagcacttacccatgcctaagcaggtgtcagtcgtgcccagaggtgctccacagatgtat
ccacaacagcagcccgagctcttctattcagagccagccagaccacctccctcaggatct
cagtatgatgctcagtacccaacaggcaacccctacccataccaacctccacagtatgtc
ccgccccgctacatccgtaatcctcctcccccgggcgagtctgcagtgccatcttaccca
gagccctacccgggttacggcccagatcgccaatatccgagccaccactctggtccccct
ttttcagcccacacatatgcaccgccctcccattacagtcgcagacacggacactatccc
gcacccccacctccgtttgccccacccagagacgacttggtcaggatgagcccggttcct
ttggatgttcccccagcagctatgcctccacctccaggaggggctgcaggatctttgtac
cacccccaggaagcgtcatccagagacagatacccaccggacgggtactatcacgctgga
ccgcaccccagccaaatgaggtcccacataggagatccatacagccgctctcagcccagt
ctggatgacttgcatcgcaggcgaaaggagctgcttgttcagcttgaggagagaaaagta
atttctcctccacccttcgctgcttccccaactctccctacacacccgttccccaacgac
taccctcgggagtatttggaggacggctctaaagcctttgggagtcgggagcctgactac
gctggccagtattccccctggtcatgtgacacaataggatcatacattggctccaaggat
gctaaaccaaaagatgtcagtagtgctgtggagatgatgaatgcagaggggaaagttctc
cgtgaacctccgctggacacccagcggcgctctgcagaagccaaagatgacgatcccatc
attccctttggtccgctgcccacagtgtctccttttggtgccatttcacgtacctctaaa
acgggttaccagaccactgggcctgtacaggccatagcatcctcacaggcctcgggctcc
aaacacatgaccatgacagcagactatccgtatggaaaccacagcggatggggtggagcg
tcataccctcagcaccagagcatcaactctcagggacacttcagcgagcgtctgcccgtg
tctgcccctgaccgcgaacagctcaagattgagctccagcaagtcaaccaacagatcagt
cagcagacccgtggcatggaggctgccagtaactctatgctcctgcagagggaggcgtgt
gcgctggcgtctcagcctgcggctggagtaaagtggtcttcaggcagcgctgtgtccagt
gagcagctcagcatggagctcgatcacgtagagctggagatcaaaaagcgaacccgtgaa
atcgctatggagaatcaggtggcccatgaatacaagcttaaggccactgagaatggccag
cctgaccgtaaagcccagctggaggaactctctttagcattgggtgaggtgtctaatgga
tccagtggcatgaagccagccagtagtatgggtggatctatgctctcgctgaccaacaag
acgtcgtctctcaccctctgctccgctgaccaagcagcgagtagctcagaccttcaaaag
aatggtgttgttcactcttgctcttaa
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