Garra rufa (doctor fish): 141344139
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Entry
141344139 CDS
T11039
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf03030
DNA replication
grf03410
Base excision repair
grf03420
Nucleotide excision repair
grf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
141344139 (lig1)
03410 Base excision repair
141344139 (lig1)
03420 Nucleotide excision repair
141344139 (lig1)
03430 Mismatch repair
141344139 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
grf03032
]
141344139 (lig1)
03400 DNA repair and recombination proteins [BR:
grf03400
]
141344139 (lig1)
Enzymes [BR:
grf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
141344139 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
141344139 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
141344139 (lig1)
DNA replication proteins [BR:
grf03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
141344139 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
141344139 (lig1)
DNA repair and recombination proteins [BR:
grf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
141344139 (lig1)
NER (nucleotide excision repair)
Other NER factors
141344139 (lig1)
MMR (mismatch excision repair)
Other MMR factors
141344139 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
eIF-3c_N
Motif
Other DBs
NCBI-GeneID:
141344139
NCBI-ProteinID:
XP_073705016
LinkDB
All DBs
Position
10:12520248..12541419
Genome browser
AA seq
1068 aa
AA seq
DB search
MQRSIASFFQPMKSKEKSDGQVKAKTEPVKSPLKIQNGVQECDSPVKKVHKRSRAIIDSD
DEDQPTVKEQVPKQSEVETVKPVKKSDVSKPASTPLSPKTPITPTTPVTSNTSVAVVTPA
SSGTPGTPATPTSTSPSGIPKRKTARKQFPKRKLESRSDEEETKEDEKEVNGGQESKRAR
VEASPEQTDTEMMEVEEKSADEKTPVEEQKDEDEAKTTVVEDNANNEMKEKDKNDLKQEK
KVNGKKEKKEDAKEKKEDAKAKKEDMKVKKEDAKKKEETNEKKEDKKAKKDAKEKEDEKA
KKEDAKEKKEDEKAKKEDAKDKKEDKKEKKEKKEDKKEKKDSSPERVVKKEKNTDEEGGS
AKKKPISSFFTPRKAAVKLEKEERNEGEKKKDGEVSDATEQKEKKSEKAVDSAVQSQYDP
SRAHYHPVDHACWTKGQKVPYLAVARTFEKIEEDSGRLKNIETLSNFLRSVILLSPDDLQ
CCVYLCLNQLGPAYQGLELGVGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSRS
NQRMMFAPANLTAGGVFNKLKEIANMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAG
KLRIGLAEQSVLTALSQAVCLSPPGQEFPPAVLDAGKKMSVENRRAWLEEKALILKQTYC
EMPNYDAIIPVLLKEGIDELPKHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEASFTCEYK
YDGERAQIHILENGEVRIFSRNQEDNTSKYPDIISRIPQVKKENVRSCVLDSEAVAWDRE
KKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVREPLSKRRALLHESFEE
KEGEFVFARSLDSDNTDVIAEFLEQSVRDSCEGLMVKTLDKHATYEIAKRSHNWLKLKKD
YLEGVGDTVDLCVIGAYLGKGKRAGNYGGFLLACYDEENEEFQSVCKIGTGFKDEDLEQH
YNFLKEHIIPKPRPYYRVDASAEPDVWLEAVQVWEVKCADLSLSPVYKAAMGLVDPEKGI
SLRFPRYLRIRDDKKPEDATTGSQIADLYKKQQQIQNQGEKQDLEDYY
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcatagcgtcattctttcagccaatgaaaagtaaggagaagagtgatgga
caggtcaaagcaaaaaccgaacctgttaaaagtcctctcaaaattcagaatggcgtgcag
gaatgtgattcgccagtaaagaaggttcataaacgcagtcgcgcaatcatagacagcgat
gatgaagatcagccaacggtaaaagagcaggtgccaaaacagagtgaagttgaaaccgta
aaaccagtgaagaagtctgatgtttcaaagcctgcttccacgccgttatctccaaaaact
cccataaccccaacgactccggtcacatcgaatacctctgttgcggtggtcacccctgct
tcctcaggcactccaggaactccagctactccgacatcaacatcgccttcaggcattccc
aaacgcaagaccgcccgcaagcagttccccaagaggaaattggaaagcagaagtgatgaa
gaggagacgaaagaggatgagaaggaggtcaatggagggcaggagagtaagagagcacga
gttgaggcctcacctgaacagacagacaccgagatgatggaggttgaagagaagagtgca
gatgagaagactccagtggaggaacagaaagatgaggatgaagcaaaaacaaccgtagtt
gaggacaatgcaaacaatgagatgaaagaaaaggataaaaatgatttgaaacaggagaaa
aaggtgaatgggaagaaagagaaaaaagaagatgcaaaagagaaaaaagaagatgcaaaa
gcgaaaaaagaagacatgaaagtgaagaaagaagacgcgaaaaagaaagaagagacaaat
gagaagaaagaagacaagaaagcgaaaaaagacgcgaaagagaaggaagacgagaaagcg
aaaaaagaagacgcaaaagagaagaaagaagacgagaaagcgaaaaaagaagacgcgaaa
gataagaaagaagacaagaaagagaagaaagaaaagaaagaagacaagaaagagaagaaa
gatagcagtcctgaacgagtggttaaaaaagaaaaaaacacagacgaggaagggggatcg
gccaagaagaaacccatcagcagtttttttactcccagaaaggcagctgtaaaactggaa
aaagaggagcgaaatgagggagagaaaaagaaggatggagaggtctctgacgctactgaa
caaaaagagaagaaaagtgaaaaggcggtggattctgcagtccagagtcagtatgatccc
tccagagcacattatcatcccgttgaccatgcctgctggacaaagggccaaaaagtgcca
tatttggctgtcgctcgcacctttgagaagattgaagaggattcaggcaggctaaaaaac
attgaaacactttccaactttctgcgatctgtaattctcctctctccagatgacctgcaa
tgctgtgtatacctgtgtctgaatcagctcggccctgcatatcagggtctggagctgggt
gttggcgagaccgtcctgatgaaagccgtagctcaagcaactgggcgacaactggacaaa
atcaaggcggaggcccaggagaaaggtgacctgggattggttgctgaaagttcccgcagc
aaccagaggatgatgtttgcaccggccaatctgacagcagggggcgttttcaacaaacta
aaagagattgctaatatgagtggaaactctgcaatgaataagaagattgacattattaag
ggcttgtttgtggcgtgtcgtttttctgaggctcggtacattgtgcggtctctggctggg
aagctgcggatcggattggccgagcagagcgttctcacggctctcagtcaggctgtgtgt
ctgtcgcccccgggccaagagttcccaccggctgtgctggatgcagggaaaaaaatgagt
gtggaaaacaggagagcgtggctggaggagaaagcactgatcctcaaacaaacatactgt
gagatgccaaattatgatgcaatcattcctgtattgctgaaggagggcatagatgaactg
ccaaagcactgcaagctcaccccaggtgtgcccctgcggcccatgttggctcacccgact
aaaggggtcggtgaggtaatgaaacgttttgatgaggcatcgttcacctgcgagtataaa
tacgatggagaaagagcccagatccatattcttgagaatggggaggtgcgcatttttagc
cgaaaccaagaggacaacacaagcaaataccctgatatcatttcacgaatcccacaggtg
aagaaagagaacgttcggtcctgtgttctggattcagaggcggtggcctgggacagagaa
aagaaacagatccagccatttcaggtcctcaccacgaggaaaaggaaggatgtggacgca
tctgagatcaaggttcaggtgtgtgtgtacgcctttgatctgctgtacctcaacggagag
tccctggtgcgagagcctctaagcaaacgtagggctctgttacatgagagttttgaggag
aaagaaggggagtttgtttttgctcgatctctcgactctgacaacacagacgtcattgct
gaattcctggagcagtctgtacgagattcttgtgagggcctgatggtgaagacgttggac
aaacatgcaacttacgagattgccaaacgctcccacaactggctcaagctgaagaaagac
tatctggagggtgttggagacacagtggatctgtgcgtgattggtgcttatctaggaaag
gggaagagagcaggcaactatggaggatttctactggcctgctacgatgaggaaaacgag
gagtttcagtctgtctgcaagattggaacaggcttcaaagatgaagatctggagcaacat
tacaatttcttaaaggagcacatcatacctaaaccacgcccatattaccgcgtggacgca
tcagcagagccggatgtttggctggaggcagtgcaagtgtgggaggtgaaatgcgctgac
ctttcgctgtctccggtctacaaagcagcgatgggattggtggacccagagaaaggcatt
tcacttcgtttcccacggtaccttcggatcagagatgacaagaaaccagaggatgccacc
acagggtcacagattgcagatctctataagaaacagcagcagattcaaaatcagggtgaa
aagcaagatctggaggactactattga
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