Garra rufa (doctor fish): 141344241
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Entry
141344241 CDS
T11039
Symbol
ptch2
Name
(RefSeq) protein patched homolog 1
KO
K11101
patched 2
Organism
grf Garra rufa (doctor fish)
Pathway
grf04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
141344241 (ptch2)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Sterol-sensing
TRA2_N
Patched
MMPL
DUF2102
Motif
Other DBs
NCBI-GeneID:
141344241
NCBI-ProteinID:
XP_073705150
LinkDB
All DBs
Position
10:20306744..20332643
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AA seq
1447 aa
AA seq
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MASDPRDPGPAGGVFGDLPPSYTRSPPPVNSDLLRRPSYCHAAFALKQISKGKAVGQKAP
LWIRARFQAFLFSLGCHIQRHCGKVLFIGLLVFGALSVGLRVAAIETDIEKLWVEAGSRV
SKELRYTKEKQGEESVFTSQMLIQTPKQEGTNILTQEALLLHLEAALSASKVQVSLYGKS
WDLNKICFKSGVPIIENVMIERMIDKLFPCMIVTPLDCFWEGSKLQGGSAYLPGMPDIQW
MNLDPLKLMEELSQFTSLEGFREMLDKAQVGHAYMNRPCLDPNDTDCPHSAPNKDPRQVP
DIAAELQGGCHGFSKKFMHWQEELILGERVKDSQNALQSAEALQTMFLLMSPKQLYEHFK
DDYEIHDINWNEDKATAILESWQRKFVEVVHGSIPQNSSSNVYAFSTTTLNDIMKSFSDV
SVIRVAGGYLLMLAYACVTMLRWDCAKSQGAVGLAGVLLVALSVAAGLGLCSLLGLSFNA
ATTQVLPFLALGIGVDDMFLLAHSFTETRSNIPFKERTGDCLRRTGTSVALTSINNMIAF
FMAALVPIPALRAFSLQAAIVVVFNFAMVLLIFPAILSLDLHRREDKRLDILCCFYSPCS
SRVIQIQPQEFSDANDNHQHAPATPTYTGSTITTSTHITTTVQAFTQCDAAGQHIVTILP
PTSQISTSPPSMVLSTPTPTADPYGSQLFTTSSSTRDLLAQVEEPKEGRECVPLPFFRWN
LSSFAREKYAPLLLKPETKTVVIVVFVALLSLSLYGTTMVHDGLYLTDIVPRDTKEYDFI
TAQFKYFSFYNMYLVTMDGFDYARSQRQLLQLHNAFNSVKYVVKDSNHKLPRMWLHYFQD
WLKGLQATFDADWEAGRITHDSYRNGTEDGALAYKLLIQTGSKKEPFNYSQLTSRRLVDE
DGLIPPEVFYIYLTVWVSNDPLGYAASQANFYPHPREWIHDKYDTTGENLRIPAAEPLEF
AQFPFYLNGLRQASDFIEAIESVRTICEEFMRQGIQNYPNGYPFLFWEQYIGLRHWFLLS
ISVVLACTFLVCAILLLNPWTAGVIVFILAMMTVELFGIMGLIGIKLSAIPVVILIASVG
IGVEFTVHIALGFLTAIGDRNTRSAVAMEHMFAPVIDGAISTLLGVLMLAGSEFDFIMRY
FFAVLAILTLLGILNGLVLLPVLLSLMGPPAEVIPANNANHLQSPSPEPMPPPMNHHGYY
AGHIPKGPRQAFSETSESEYYSETTTTSGIGEEEYKYCDRSAYITSPAQPPTSHILLEAS
KNPSFPKLTVVKPLNENTSKGQNSESKQNAVNSVSSQITRWDNKHEYQGQRRQHLPSDRT
HCRTTQCGPGPQPGRGQQQNRTTAPAHSSGALQRPNNAITMVTATASVTVAVHPSLPGSY
QGYMHDGFEDNESDSFDDSKRTSQMYGKATHYKRDSLELQDLESTEKNQHQANQALGGAW
IQAAKDC
NT seq
4344 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggatcccagagacccgggaccggccggtggtgtttttggagatttaccccca
agttacacacgctctccgccgcctgtgaactcagatctcctccggagacccagttactgc
cacgccgcttttgcgttaaaacagatttctaaggggaaagctgtgggacagaaagcacca
ctgtggattcgggcgaggttccaggcttttctcttttctctgggctgtcacatccagcga
cactgtggaaaagtccttttcattggacttcttgtgttcggagccctgtctgttggtttg
cgggtcgctgccattgaaacggacattgagaaactatgggtggaagctggcagtcgggtg
agcaaggagctacgctacacaaaagagaagcagggagaagaatcagtgttcacctcacag
atgctcatacagacaccgaaacaggaaggaaccaatattcttacccaggaggctttgctg
ctccacctggaggctgctctgtcagccagcaaagttcaagtgtctctttatggaaaatct
tgggatcttaataaaatttgcttcaaatccggagtcccaattatagaaaatgtcatgatt
gagaggatgattgacaaacttttcccctgtatgatcgtgactccgctggactgcttttgg
gaaggctctaagttgcagggaggctctgcctatttaccgggcatgcctgacattcagtgg
atgaatctggaccccctcaagctaatggaggagttgagccagtttacatctctagagggc
ttccgagagatgctagataaggctcaggtgggccatgcctatatgaaccgcccatgcttg
gatcccaatgacacagactgccctcacagtgcccctaataaggacccacggcaggtcccc
gacattgctgctgaacttcagggtggttgccatggtttctccaagaagttcatgcactgg
caggaggagttgatcctgggtgaaagagtaaaggactcccagaatgccttgcagagtgcg
gaggcccttcagactatgtttctcctcatgagccccaaacagctctatgagcactttaaa
gatgactatgagattcatgacatcaactggaatgaggacaaggccactgccatcttggag
tcctggcagaggaagttcgttgaggttgtccatgggagcattcctcagaactcttcctcc
aatgtttacgccttctcgaccaccactctcaatgacatcatgaagtctttctccgacgtc
agcgtaatcagggtggcaggtggttatctgctcatgctggcatatgcatgtgtgaccatg
ctgcgctgggactgcgctaagtctcagggtgctgtggggctggctggagtgcttctagtc
gctctttctgtggctgcaggacttggtctgtgctcactgctggggctgtccttcaatgcc
gccaccacacaggtgctgccattcctggccctgggcattggagttgatgacatgtttttg
ctggctcattccttcaccgagaccagatccaacatcccgttcaaggagaggacaggtgac
tgcctaagaagaaccggcaccagcgtggctctcacctccatcaataacatgattgctttt
ttcatggctgccctagtgcctattcctgctctccgagccttctcgcttcaggctgctatt
gtggtggtctttaattttgccatggttctgctgatcttccctgccattctgagcttggac
ctgcacaggcgggaggacaaaagactggacatcctgtgctgtttctacagtccctgttca
tctcgggtgatccagatccagcctcaggagttctcggacgctaacgacaaccaccagcat
gctccggccacccccacctacactggctccactataaccaccagcacccacatcaccacc
actgtacaggcattcacccagtgtgatgcagctggtcagcatattgtcaccattctgcca
cccacttcccagatctccaccagtcctccatccatggtcctatccacacccactcccacc
gctgacccttatggctcccagctgttcaccacctccagctccaccagagaccttctagcc
caggtggaagagcccaaagaggggcgcgagtgtgtgcctttgcctttctttcgctggaat
ctgtcaagctttgcacgggaaaagtatgcccctctgttgctcaagcccgaaactaagact
gtggtgatcgttgtttttgtggctcttctgagcctcagcctgtatggtaccacaatggtc
catgatggactctacttgaccgatattgtccccagagacacaaaggagtatgactttatc
actgcccagtttaaatacttctccttctataacatgtacctggttaccatggatggcttt
gactatgcccgttctcaaagacagcttctacagcttcacaatgccttcaactctgtaaaa
tatgtagttaaggacagtaatcacaagcttcccagaatgtggctgcactacttccaggat
tggctcaaaggtctgcaggctacatttgatgccgattgggaagctggcagaatcacccat
gacagctatcgcaatggcacggaggatggagcgctggcctacaagcttctcatacaaact
ggctctaagaaagaacctttcaactacagccagctcacatcccgtcgcctggtggacgag
gatggtcttattccaccagaggttttttacatctacctgacagtatgggtcagtaatgat
ccgttaggctatgctgcttcccaagccaacttttacccccatcctcgagagtggatccat
gataagtacgacaccactggggagaaccttcgcattcctgcggcagagcctctagagttt
gctcagtttcctttctacctaaatggcctcagacaagcctcagacttcattgaagccatc
gagagtgtgcgcacaatctgcgaggaatttatgcgccagggaattcagaactatcccaac
ggctacccctttttgttttgggaacagtacattggtctgcgccactggttcttgctgtcc
atcagcgtagtgcttgcctgcaccttcctggtgtgcgccatcctcttgctcaacccctgg
actgcaggcgtcattgtttttattttggctatgatgacggtggaactttttggcatcatg
ggcctaattggcatcaaactgagcgccattcctgttgtcatccttatagcatccgttggt
atcggagtggagtttactgtgcacattgcactgggtttcctaactgccattggggacagg
aacactcgttcagccgtggctatggagcatatgtttgctcctgtgattgacggcgccatc
tctactctgctgggagtgcttatgcttgccggttcggagttcgacttcatcatgagatac
ttctttgcggtgttggccatactgacattgttggggatcctgaatggtctggtcctactt
ccggtactgctttcactcatgggcccgccagcggaggtcatacccgctaacaatgccaac
cacttgcaaagtccctctcctgagcccatgcctcctcccatgaaccaccacgggtattac
gctgggcacattcccaagggaccacgtcaggcgttctccgagacctccgaatccgaatac
tattctgaaactacaaccacctctggcattggcgaggaggagtacaagtactgtgacagg
agcgcatacatcacgtctccagctcaacctccaacctctcacatcctgctcgaagccagc
aagaaccccagcttccctaagctaacagtggtgaaacctctcaatgaaaacacctctaaa
ggacagaacagcgagtccaagcagaatgcagtcaactcagtcagttcacagatcacacgg
tgggacaacaaacacgagtaccaagggcaaaggcgacaacatttacctagcgacaggacc
cactgtaggactactcagtgtggcccagggccacaaccagggagagggcagcagcaaaac
aggactacagccccagcccacagctctggggcattgcagcgccctaacaatgcaatcacc
atggttacagcaacagcctctgtgacagtggcagtgcaccccagtttgccggggtcgtac
cagggttacatgcacgatggatttgaggataacgagtcggactcttttgatgactctaag
aggacttctcaaatgtatgggaaagctacacattataagagggactctttggaacttcaa
gatttggaatccacagagaaaaaccagcatcaagctaaccaggcgctaggtggtgcatgg
atccaagcagccaaagattgctag
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