Garra rufa (doctor fish): 141344294
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Entry
141344294 CDS
T11039
Symbol
shhb
Name
(RefSeq) tiggy-winkle hedgehog protein
KO
K11988
sonic hedgehog
Organism
grf Garra rufa (doctor fish)
Pathway
grf04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
141344294 (shhb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
grf01002
]
141344294 (shhb)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
grf00536
]
141344294 (shhb)
Peptidases and inhibitors [BR:
grf01002
]
Cysteine peptidases
Family C46: hedgehog family
141344294 (shhb)
Glycosaminoglycan binding proteins [BR:
grf00536
]
Heparan sulfate / Heparin
Morphogens
141344294 (shhb)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HH_signal
Hint
DrmE_C
Peptidase_M15_3
Vint
Ribosomal_S6e
PT-HINT
VldE
Hom_end_hint
Motif
Other DBs
NCBI-GeneID:
141344294
NCBI-ProteinID:
XP_073705249
LinkDB
All DBs
Position
10:23413302..23418298
Genome browser
AA seq
416 aa
AA seq
DB search
MDVRLHLKQFAFLCFISLLLTPCGLACGPGRGYGKRRHPKKLTPLAYKQFIPNVAEKTLG
ASGKYEGKITRNSERFKELIPNYNPDIIFKDEENTNADRLMTKRCKDKLNSLAISVMNQW
PGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKSKYGMLSRLAVEAGFDWVYYES
KAHIHCSVKAENSVAAKSGGCFPGSGTVTLANGRRKHIKDLKAGDRVLAADEEGNVFLSD
FIMFMDHDPTTRRQFIVIETSEPFTKLTLTAAHLVFVGNASVDSGITATFASNVKPGDTV
LVSEGTSKSLKSVTVRRIYIEEHQGSYAPVTAHGTIIVDQVLASCYAVIESHKWAHWAFA
PARLSHELMTWLFPARDSNVTFQEDGIHWYSNMLFHIGSWLLDRDSFHPLGISHLS
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgaggctgcatctgaagcaatttgcttttctgtgttttatcagcctgcttctg
acgccttgtggattagcctgtggtcctggtagaggttatggaaaacgaagacacccaaag
aaattaaccccgttggcttacaagcaattcattcccaacgttgccgagaaaacgcttggg
gccagcggcaaatacgaaggcaaaatcacaaggaattcagagagatttaaagagctgatt
ccgaattataatcccgatatcatctttaaagacgaggaaaacactaacgctgacagactg
atgaccaagcggtgtaaggacaagttaaactcgttggcgatatccgtcatgaaccagtgg
ccgggtgtgaaactgcgcgttactgaaggctgggatgaggatggtcaccatttcgaagaa
tctttgcactacgagggacgagcggtggacataactacctcagacagggataaaagcaag
tatgggatgctatctagacttgcagtggaggcaggattcgactgggtctattacgaatcc
aaagcccatatacactgctctgtcaaagcagaaaactcagttgctgctaaatcaggggga
tgctttcctggatctgggacggtgacgctcgcaaacgggaggaggaagcacatcaaagat
cttaaagcgggcgaccgggtgttagctgcggatgaggagggaaatgtctttttaagcgac
ttcattatgttcatggaccacgatcccacaacgagaaggcagttcattgtcatcgagacg
tcagagccttttacaaagctcaccctcacggccgcgcaccttgtcttcgttggaaacgca
tcagttgattctggtataacagcgacatttgcaagcaacgtaaagcctggagatacggtt
ttagtgtcggaagggacgagcaagtccctcaagagcgttacagtgaggaggatttacatt
gaagaacaccagggctcttacgcgccagtcaccgctcacggaaccataatagtggatcag
gtgctggcttcgtgttacgcggttattgagagtcacaaatgggcacactgggcgttcgca
ccggccaggttaagtcacgagctgatgacgtggctttttccggctcgtgattcaaacgtc
acttttcaggaggacggcatccactggtactcaaatatgctgtttcacatcggctcttgg
ctgctggacagagactctttccatccactcgggatttcacacttaagttga
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