Garra rufa (doctor fish): 141344644
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Entry
141344644 CDS
T11039
Symbol
tnn
Name
(RefSeq) tenascin-N isoform X1
KO
K06252
tenascin
Organism
grf Garra rufa (doctor fish)
Pathway
grf04510
Focal adhesion
grf04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
141344644 (tnn)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
141344644 (tnn)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
grf00536
]
141344644 (tnn)
Glycosaminoglycan binding proteins [BR:
grf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
141344644 (tnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
Ig_DSCAM-DSCAML_C
EGF_2
EGF_Tenascin
Pur_ac_phosph_N
Interfer-bind
NDNF
SdrD_B
EGF
DUF460
hEGF
YPEB_PepSY1-2
Motif
Other DBs
NCBI-GeneID:
141344644
NCBI-ProteinID:
XP_073705621
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All DBs
Position
10:19062353..19115677
Genome browser
AA seq
1020 aa
AA seq
DB search
MIVRFNGLKRGLFLLGTLFAVSHLVLSNEVGPAEKEVTFSHVYRIDSGCKQGSQVAQLSQ
DQASEGQLVTVDGENDIVFKHNIRLQSAGCGCADSEDFKSLLYRVNGLEEEVAYLKSQCA
QGCCKGGSGVDTSCSGHGTYQHDSCSCKCNPGWEGPDCSISSCPDECNDNGRCVDGRCVC
YEGYTGHDCSQLTCPNDCKDKGHCVDGKCVCFSGFSGEDCSIATCPNDCIGNGRCVDGQC
ICDEGFFGIDCSMVLGPKGLRLIKVTDVSLLVEWESVRGAEYYILSYYPKGDEGAIKEVQ
VENTKNSYLITGLKPGVTYIVQVYAVIRGINSESDEIVATTAVSGIEGIKVLGQTEDSIQ
VDWKNPAIAVDFFKLTHASPDGREGQENVAMSQEARTKHTIVGLNPGTEYQIGVQAIKGE
IEGKASYATGVTDIDAPTNLATREVTENSATVTWDGVRAEIDGYMLTYSSPEGTSREIKV
GADATSYQLTSLKPGVLYTVFLWAYKGSRSSRKSMTEAETDIDAPTNLMTREVTEDSALV
TWNKVQADIDGYMLSYSSIDGTNQEVRAGADSTSYRFTGLKPGVLYTVYVWAIKGPRASK
KSSTEAETDIDAPTNLLTREVTEDSAMVTWNKVQADIDGYMLSYSSVDGTSQEVRVGADS
TSYRFIGLKPGVLYTVYVWAVKGSRSSRKATTEAETEIDAPKNLKAIDVQTQTSTITWKA
PQANIDGYILTYRAEDGSMQTVEKMLTAQENRFALSNLAMGKKYIVTLIAYRGTKRSKVV
ETSFSTVGQAYPFPMDCTQIMRNGNMDSGVYTIYVNNNRSRTMQVYCDMTTEGGGWIVFQ
RRNTGKLDFMKRWREYMKGFGELTDEFWLGLEKIHELTNTPTQYEVRFDLGSGSERKYAV
YDNFKVAPSKQKFKLTIGNYKGNAGDAMTYHQGGSFSTVDSDNDIALGNCALTHQGAWWY
KNCHLANLNGRFGDNRHSMGVNWEPWKGHLESLDFAEIKIRPVGAAGRQKRSLKRRVAVY
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgattgtaagattcaacgggctgaagagaggcctgttccttctaggaacgctatttgcg
gtgtcccatcttgtgctgtccaatgaggtgggtcctgcagagaaagaagtcacgttcagc
catgtctacaggattgactctgggtgtaagcagggttctcaagtggctcagctttcccag
gaccaggcctcagaaggacagttagtcacagtggatggagagaatgacattgtcttcaag
cacaacatacgcctgcagtcggctggttgtggatgtgcagattccgaggacttcaaatcc
ctgctgtaccgtgtaaatggcctggaggaggaagtcgcctatctaaagagccagtgtgct
cagggctgctgcaaaggaggttcaggtgtggacactagctgtagtgggcatggtacgtat
cagcatgactcttgcagttgtaagtgtaacccaggttgggagggtccagactgctccatc
tcatcctgccctgatgaatgcaacgataatggccgttgtgttgacggacgctgcgtctgc
tatgaaggctacaccggccatgactgcagccagctcacgtgccccaatgactgcaaagac
aaaggccactgtgtggatggcaaatgtgtgtgcttcagtggattctcaggagaagactgc
agtatcgccacctgtccgaatgactgcataggaaacggacgctgcgtggatggacagtgc
atctgcgatgagggattctttgggatcgactgctccatggttctaggaccaaaaggcctc
cgtctgatcaaagtcacagatgtgtctctgctggtggagtgggagtctgtgcgaggagcc
gagtactacatcttgtcgtactatccaaagggagatgagggagctattaaagaggtccag
gtggaaaacacgaaaaactcctacctaatcacaggcctcaaacccggagtcacgtacata
gtgcaggtgtacgctgtcatcaggggcattaacagtgaatccgatgagatagtggctacg
actgccgtctctggtattgaaggaatcaaggtgctgggccagacagaggactctatccag
gtggactggaagaaccctgcgattgccgtggacttctttaaattgacccatgctagcccg
gatggtcgggaaggacaggagaatgtggcaatgagccaagaggccagaaccaagcacact
attgttggcctcaatccaggaacagaatatcagataggcgtccaagcgatcaaaggtgaa
attgaaggcaaggcatcgtatgccacaggggtcacagacattgatgccccaacaaatctg
gcaaccagagaggtgacagagaactccgcaaccgtgacgtgggatggtgttcgtgctgaa
attgacggctacatgctgacatacagctctccagagggcaccagccgagaaattaaagtg
ggcgcagacgctacatcttaccagctgacctctctgaaaccaggagtcctgtacacagtt
ttcctctgggcctataagggctctcgttccagtaggaagagcatgactgaggctgagacg
gatatagatgctcctactaacctcatgaccagggaggtgacagaggactcggcgttggtg
acatggaacaaggtgcaggctgacattgatggctacatgctgagctacagctctatagat
ggcaccaatcaggaggttcgagcaggagctgacagcacctcctacaggttcactggtctg
aagcctggagttctctacacagtctatgtgtgggccatcaagggccctcgcgctagcaaa
aagagctcgacggaagcagaaacagatatagatgctcctactaacctcttaacccgagag
gtgacggaggactcggcgatggtgacgtggaacaaggtgcaggctgacattgatggctac
atgctaagctacagctctgtagatggcaccagtcaggaggttcgagtaggagctgacagc
acctcctacaggttcattggtctgaagcctggagttctctacacagtctacgtctgggct
gtgaaaggctctcgctcaagcagaaaagccacaactgaggctgaaacagagattgatgca
ccaaagaatctcaaagccattgatgttcagactcaaacctccactataacatggaaagct
cctcaggctaatattgatggctacattctgacctacagggctgaggatggcagcatgcag
actgtggaaaaaatgttgactgcacaggagaatagatttgctctctctaaccttgcaatg
gggaaaaagtacattgtcacccttattgcctataggggcacgaagaggagtaaggtagtg
gagacaagctttagcacagtgggccaagcctacccgttcccaatggactgcactcagatt
atgaggaatggaaacatggacagtggcgtctacaccatctacgtcaacaacaaccgtagc
agaaccatgcaagtgtattgtgacatgacaaccgaaggcggtggctggattgtgttccag
agacgaaacaccggcaaattagatttcatgaagcgctggagagagtatatgaaaggcttt
ggagaactgacagatgaattttggctcggtttggagaagatccatgagctgactaatact
cctacacaatatgaagtgcgtttcgatctgggctcgggatctgagaggaaatatgctgtc
tatgataacttcaaagtagcaccatccaaacagaagtttaaacttaccattggcaactac
aagggaaatgctggtgatgccatgacctaccaccagggagggtctttctccacagtggat
tcagacaatgacattgcacttggtaactgtgccctgactcaccaaggtgcctggtggtac
aagaactgccacctggccaatctgaatggcaggtttggggacaacagacacagtatggga
gtaaactgggagccatggaaggggcacctcgagtctctcgactttgcagaaattaagatc
cgaccagtgggagcagcgggcagacagaagaggtcgttgaagaggagagtagctgtgtat
taa
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