Garra rufa (doctor fish): 141344692
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Entry
141344692 CDS
T11039
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
grf Garra rufa (doctor fish)
Pathway
grf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141344692 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141344692 (xab2)
03041 Spliceosome [BR:
grf03041
]
141344692 (xab2)
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
141344692 (xab2)
Spliceosome [BR:
grf03041
]
Complex B
Other components
Prp19-related factors
141344692 (xab2)
Complex C
141344692 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_2
TPR_19
TPR_8
TPR_15
TPR_16
ARM_TT21_C
ARM_TT21
NRDE-2
SNAP
ATG1-like_MIT2
Tcf25
DUF4515
Motif
Other DBs
NCBI-GeneID:
141344692
NCBI-ProteinID:
XP_073705681
LinkDB
All DBs
Position
1:26547976..26566088
Genome browser
AA seq
849 aa
AA seq
DB search
MPTLSGKADVLFEDDDLPYEEEIIRNPYSVKCWMRYIEHKQNAQKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCVTDPAYEEVNNCHERALVFMHKMPRIWIDYCQFMVSQCK
ITRSRRTFDRALRALPITQHPRIWPLYLRFARNLPLPETAICVYRRYLKLSPENAEEYID
YLRSVGRLDEAAIRLGAVVNDENFISKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLSDYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGQDEDEDIDLELRLARFELLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGQPRQIINTYTEAVQTIDSMKATGKPHSLWVSFARFYEDNEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPARKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEDSFKAYERGI
ALFKWPNVHDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKYAKTIYLLYAKLEEE
YGLARHAMAVYERATAAVEPDEQHQMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSFCSQICDPRVTALFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTNATGTVSDLAPGQSGVDDMKLLEQKAQQLAAEAEQ
DKPKPKDKILFVRSDTSRSELAELAKQANPDEIDIDDDEDEDAEDAEPDEVQLEQKSVPT
AVFGGLKDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccaactcttagcggaaaagcagacgttttattcgaagatgatgatttgccatacgaa
gaagaaatcatcaggaatccgtattcagtcaagtgctggatgcgttacattgagcacaag
caaaatgctcagaaatcagtgctcaacatgatctacgaaagagctttaaaagagctacct
ggcagttacaagttgtggtacaactacctgagagagagacgaaaacaggtgaaaggaaag
tgtgtcacagatccagcatatgaggaggtgaacaactgtcacgagagagcacttgtgttt
atgcataagatgccgagaatatggatcgactactgtcagttcatggtgtctcaatgcaaa
atcacacggagcagacgaacgttcgatagagcgttaagagcgctgcctattacccagcat
cctcgaatctggcccctgtatcttcgctttgcccgtaacttgcctctcccggaaacagct
atttgtgtttatcgccggtacttaaagttgtctcctgagaatgcagaggaatatattgat
tacctgcgttcagttggacgtctggatgaagctgcgatccggctaggagctgtggtcaat
gatgaaaactttatttctaaagagggaaagtccaattatcagctctggcacgagctttgt
gacctcatctcacaaaacccggacaaggtgacttcgctgaacgtgggagcgattatccga
ggaggtctcactcgctttactgaccagcttggcaaactctggtgttctctgtctgattac
tacattcgcagtggacactttgagaaggctcgagatgtatatgaggaagctatcctaacc
gtagtcactgtgcgagacttcactcaagttttcgacagctatgcacagtttgaagagagc
atgatcgctgccaagatggagaccacgtctgaactcggacaagatgaggatgaggacatt
gacttggaattgcgactggcacgttttgagttgctgataactcgacgaccacttttacta
aacagtgtcctgctgcgtcagaatcctcacaatgttcacgagtggcacaaaagagtcaaa
ctctacgagggccaacctcgacagattatcaacacatacacagaggctgtgcaaacgata
gattctatgaaagccacaggaaaacctcactctctctgggtgtccttcgccagattctat
gaggataatgaacagctggatgatgctcggactatctttgagaaggccacaaaggtgaac
tacaaacaggtggatgatcttgctgcagtgtggtgtgaatatggagagatggagctgaga
cacgagaattatgaccaagctttacgtatactaaggaaagcaacagcgattcctgcaaga
aaagcagagtattttgatgcatcagaaccagtgcagaatcgagtatataagtcactgaaa
gtatggtccatgctcgcagacttggaagagagtcttggcacattccagtccacaaaggca
gtgtatgatcgcatcattgatctccggatcgcaacgcctcagatcatcattaactacgcc
atgtttcttgaagaacacaactactttgaggacagtttcaaggcatacgagcgtggcatt
gccctctttaagtggcctaatgtccatgacatctggaacacatacctcaccaagttcatc
gaccgttatggaggcaagaagctggagagagcgcgagatctgtttgagcaagcgctggat
gggtgtcctgctaaatatgccaaaacaatctacttgctgtatgctaagctggaagaggag
tacggtctggcgcgacatgccatggctgtgtatgagagagccactgcggctgtagaacca
gacgaacaacatcaaatgttcaacatctacatcaaacgggcagcagagatttatggagtc
actcacacaagagccatctatcagaaagccattgaggtcctgccagatgagcacgccaga
gacatgtgcctgcgtttcgctgacatggagagcaaacttggggagattgacagagcgaga
gccatctactccttctgctctcagatctgtgatccaagggtgactgctcttttttggcaa
acgtggaaggagtttgagatacgccacggtaatgaggacaccatccgtgagatgctgcgg
attaagcgcagtgtgcaagccacatacaacacacaagtcaacttcatgtcctctcagatg
ctcaaggcaaccaccaatgctactggaacagtgtcagatcttgctcctgggcagagcgga
gtggatgacatgaagctgctggagcagaaggctcaacagctcgctgcagaggcagagcag
gacaaacccaaacctaaagacaagatccttttcgtcaggagtgacacctcacgcagtgaa
ctcgccgaactggccaagcaagctaatccagatgagatcgacattgatgatgatgaagat
gaggatgcagaagatgcggaaccagatgaggtgcagttggagcagaagtctgtccctact
gctgttttcggaggactaaaggatgactga
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