Garra rufa (doctor fish): 141344693
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Entry
141344693 CDS
T11039
Symbol
smarcd3a
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
grf Garra rufa (doctor fish)
Pathway
grf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
141344693 (smarcd3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
grf03021
]
141344693 (smarcd3a)
03036 Chromosome and associated proteins [BR:
grf03036
]
141344693 (smarcd3a)
Transcription machinery [BR:
grf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
141344693 (smarcd3a)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
141344693 (smarcd3a)
PBAF complex
141344693 (smarcd3a)
GBAF(ncBAF) complex
141344693 (smarcd3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
SWIB_eIF2D
NPC1_MLD
Motif
Other DBs
NCBI-GeneID:
141344693
NCBI-ProteinID:
XP_073705679
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All DBs
Position
10:21460112..21483403
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AA seq
475 aa
AA seq
DB search
MDMEDSAGGARKATKSKLFEFLVHGVRPGMTSGARMPHQGAPMGPPGPPYGGTPPIRPGM
PNPALDPNRKRPAPTQPVQPPPVQNRPRNAKRRKMADKILPQRIRELVPESQAYMDLLAF
ERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSEGSIASWELRVEG
KLLDDPGKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDVNV
RCTLLLMLDYQPPQFKLDPRLARLLGIHTQTRSCIIQALWQYVKTNKLQDSHEKEYINCD
KYFQQIFDCPRLKFSEIPQRLTNLLLPPDPIVINHVISVDPNDQKKTACYDIDVEVDDPL
KSQMNGFLLSTANQQEIASLDNKIHETIESINQLKIQRDFMLSFSRDPKGYIQDWICSQN
RDLKLMTDTVGNPEEERRAEFYNQPWSQEAVSRYFYCKIQQRRQELEQALAMRTT
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggacatggaggattctgccggaggagctcgtaaagccaccaagagtaaactgtttgag
tttctcgtccatggagtgcgtccagggatgacctcaggggcacggatgccccatcaaggc
gctcccatggggcctcctggacctccatatggaggaacgccacctattcggccagggatg
cctaatccagccctagaccccaaccgaaaacgtcctgccccaacccagccagtgcaacct
ccccccgtccaaaaccgtcccagaaatgccaagagaagaaaaatggcagacaagattctc
cctcagaggattcgtgaactggtgccagagtcccaggcatacatggacctcctggctttt
gagcgcaaacttgaccaaaccataatgaggaagagggtggatatacaagaagctctcaaa
agaccaatgaagcaaaagcggaagctacgactgtacatttcaaacactttcaaccctgcc
aaacctgacgcagaggactctgagggcagcattgcatcctgggagctgcgtgtagagggc
aagttgttggatgatcctggaaaacaaaagaggaagttttcgtctttctttaagagcctt
gttattgagctggataaggatttgtatggccctgacaaccacttagtggagtggcaccgc
actccgacgacccaggagacagatggcttccaggtgaagaggcctggcgatgtgaatgtg
cgctgtaccctcttactcatgctggattaccagcctcctcagtttaagttggatcctcgc
cttgcgcgtctccttggcatccacactcaaacccgctcctgcatcatccaggctttatgg
cagtatgtcaagaccaacaagctgcaggattctcatgaaaaggagtacattaactgtgat
aaatatttccagcagatctttgactgtcctcgtctgaagtttagtgagatcccccagcga
ctaaccaacctgctgctcccgcctgatcctattgtgatcaatcatgttatcagtgtggat
ccaaatgaccagaagaagacagcctgctatgacattgatgttgaagttgatgatcctctt
aagagtcagatgaatggattcctgctatccacagccaatcagcaagagattgcatcccta
gacaacaagattcatgaaactatcgagtccatcaaccagctgaaaatccaaagagatttc
atgctcagcttctccagggatcccaagggttacatccaggactggatctgctcccagaac
cgagaccttaagctgatgacagatacagttggaaatccagaggaagagagaagagcagag
ttttataaccagccctggtctcaagaagctgtcagccgctatttctattgcaagattcaa
caacgaaggcaggagcttgaacaagctttggcaatgcgaaccacctaa
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