Garra rufa (doctor fish): 141345025
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Entry
141345025 CDS
T11039
Symbol
chd7
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 7 isoform X1
KO
K14437
chromodomain-helicase-DNA-binding protein 7 [EC:5.6.2.-]
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
grf03036
]
141345025 (chd7)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
141345025 (chd7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HTH_Hrp3
HDA2-3
Myb_DNA-bind_7
MUN
Motif
Other DBs
NCBI-GeneID:
141345025
NCBI-ProteinID:
XP_073706021
LinkDB
All DBs
Position
10:complement(28967145..29012531)
Genome browser
AA seq
3128 aa
AA seq
DB search
MADPGMMSLFGDDGNLFSDELEGLGDCGYPQGQANPMSQQMPHEHQSYGQLPSSLHLSSP
AVPGQAKLGHHFDHFNQYEQPKMHPMDQQGGRMMGNGPVNGMSSPHSRYHGPPPGAGASA
GHHVYPGTQGDGRSQSFPDGGNAWGTQAMQVPDQARPPFQQQPPQASSHQHGPAGAQGHA
HQMGSFIARGDYAMQGHNQTQTPPRMNHFPQGLPQEANHFMGHVGMTQNPGMSGPPMRHP
AQPPQQHQQPNQQFLHRPGQGSVHPEPVASHNPQFPQSPSRQQQQQPQQQAMGGRPHQNM
GFNMHNQQVPSNTVNSSGQYPPYPSYGNLNQGLANTSGMSPNLSLTTSSNSNPNAPVTQV
QRYPAPTGPQRYPTPGAQQGPMHQQPIHVNQISTQPMHPAQNQATAQQKLQQQHLPPPPQ
GSYASPPSMSPMRNLATPAGTPPPQQGRPPSAGLGTDVGGYPGVPHQSQGPMAHAQRGAC
PVNAAQQHPHQQLPSLPSHPHPPPTQMYAALSPNHRATGAQGRPPAGPGANHTEPQDQRL
LAQQVQCQQLQTPPLPFQQQQLQQVHTPPSIPPSQTHLAAHHQSSPPSQQAWAPPHQSPP
PMQKVPHMQHSPSDPSLEMITSSKTPASGPNLQPANCDIQQTESELKPKKKKKKKAKTSE
GQEGNDISGEAGGEAASLMNEGDSLMTPIEQPVVEKKSKKKPKEKEPKEPKEPKTPKTPK
TPKTPKEPKEPKEKKVKTATPKPKSSKKPSAKKSDSESSNSTKKDAKRKREPSVTSDVEK
SPPHSPEEEEDDGVQKRRSSRQVKRKRYTEDLEFKISDDDGDDSNGPKSPSTMSEQQELP
DAEGPVVEKIMGMRMGKKELASGEEVDVEEFYVKFKGFSYLHCRWSDIEELEKDKRIQQK
VKRFKAKQALSNFLSEMDDEPFNPDYVEVDRVLDVSESTDENGELVTLYLVKWCSLPYED
STWELKADIDQGKIEEFERVMEREPQLKRVERPPASDWQKSESSREYKNGNALREYQLEG
VNWLLFNWFNTRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREF
RTWTELNVVVYHGSQASRKTIQAYEMYYRDTQGRVIKGAYKFHAIITTFEMILTDCPELR
SVPWRCVIIDEAHRLKNRNCKLLEGLKMMDMEHKVLLTGTPLQNTVEELFSLLHFLEPDR
FPSETTFMLEFGDLKTEEQVQKLQGILKPMMLRRLKEDVEKNLAPKEETIIEVELTNVQK
KYYRAILEKNFAFLSKSGGGGGGGGGSNVPNLLNTMMELRKCCNHPYLINGAEEKIMEEF
RESHPLDHPEFHLQAMVQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQR
RYPYERIDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWN
PQNDLQAQARCHRIGQSKAVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENAA
NGVQQLSKKEIEDLLRKGAYGALMEEEDEGSKFCEEDIDQILQRRTQTITIESEGKGSTF
AKASFVASGNRSDISLEDPDFWQKWAKKAELDLDAISGRNNLVIDTPRVRKQTRHYSSMK
EDDLMEYSELESDSEDKPIQKPRRPQDRAQGYPRSECFRVEKNLLVYGWGRWGDILSHGR
FKRPLRERDVETICRALLAYCLLHYRGDENIKSFVWDLITPTEDGQSRTLTNHSGLSAPV
PRGRKGKKGKPQAAQTHLPQADWLADCNPDILLQEDSYKRHLKHHCNKVLLRVRMLYYLR
QEVIGDHADRILEGTDSSELDIWIPQPFHADVPTDWWDLEADKSLLIGVFKHGYEKYNSM
RADPTLCFLERVGMPDAKAIAAEQRGADMMADGVEGEDEDPEYKPLRMPFKDDLDDFTNS
PLDDKDDGMDGETREVPKLGENGKAGNLYWPPASALTARLRRLITAYQRTHKREQLRQEA
MTKPDRRRGRPRDDILAMVTEGGAYASDGAVAFMAEGGPFMAKGSPFMPDSAALLADGAA
YFKERRQRWTRREEADFYRVVSTFGVVYDVHRQCFDWSQFRAFARLDKKTDESLEKYYYS
FVAMCKRVCRMQVKSETELPDPTLIIDPITEERASRTLYRIELLRRIREQVLPHPQLDER
LSLCQPSPDLPAWWEPGRHDRDLLRGAAKHGVSRTDYHILNDPELSFLEAHRKFTQGKGA
ELPIGSDPLTPLNLLKDEEVKEEQGDVLVPKVENGDMEEVKEKKPEALSPKKEEEANDLG
LKHEPKEEKMEVEEKDDTMEVKTKVEEGCPVDGMADEKPMIQEPTTPEDKMAQDEKEPPS
ITETKLSTDKTCKEDEEEKIDEDDKSEKSSQAEAGAASERKNFDEESNASLSTARDETRD
CFSVDDVEPSASQMFSERSLFSFWPKDRVMINRMDNICDAVMKGKWPSNRRQFFDFPGLL
PGYSSMATDSPLQRRSLGDLSMVGQTSYSGSEDLTMSPQVNKDDALSLSVPRQRRRRRRK
VEIEAERAAKRRNLMEMVAQLRESHASEGQAQAMDLTKALHGVSASSSAFPGAMASSAAL
KAQMELLQAGASSRPRANGSLLDSELPNRRKRGRRKNVEGLELLFVENKRGQLNAENSDG
TKAFVDGRANRPMSSPAHKAPVEALEEGSHLTGEDGPSTKDLREWLRQHPTYTMDMPGYA
PKNEDHLLSQFAKPKQKRHRCRNPNKIDINTLTGEERVPVVNVRNGRKMGGAMAPPMKDL
PRWLVENPEFAIAPDWTDIVKQSGFLPEAMFDRLLTGPVVREEGVRRRGRRPKSEIAKAT
AAAQVAAAAAAASTSGVNPLLMNGLFGGMDLTSLQGLQNLQSLQLAAGLMGFPPALGGGV
DAKHAAAMLPLMLPGMGGLPNMFSLGGLFGGNLAAAATATNGAEQAESEENPKPKMDEET
KDEGDENEEKEEDKSTETESAEGTGDAAALNAAAAAATAAGMSTNPLAFNPFLLSTMAPG
LFYPSMFLPPSLGGLGIPGFPQASLADLQSAVSGALGAAGEDKEPGKGPRTNQDQNASTA
DVETADNTLEDSDSEESQNKTADSSVLDDDLAGPAEEIDSMEGGMDDEDDDDDDDEDDDP
ADEDDKSD
NT seq
9387 nt
NT seq
+upstream
nt +downstream
nt
atggctgacccgggcatgatgagcctcttcggagacgacgggaatctgttctctgatgag
ttggagggcctgggagactgtggctacccccaaggtcaagcaaatcccatgagtcaacag
atgccccatgagcaccaaagctacgggcagctcccctcttctcttcacctctcctcacct
gctgtacctggacaggccaagcttggccaccattttgaccacttcaatcagtatgagcag
cccaagatgcatccaatggaccagcaggggggccggatgatggggaacggaccagtaaac
ggcatgtcctcccctcattcccgctatcacggtcctccgccaggtgcgggagcgtctgca
gggcatcatgtctacccggggacacagggagatggacggagccagtcattcccagatggc
ggaaacgcatggggcactcaagcaatgcaggtgcccgatcaagctagaccccctttccag
cagcaacccccacaagcctcgtctcatcagcacggccctgccggagcacaaggacacgcc
caccaaatgggctcttttattgcccgtggtgactatgccatgcaaggccacaaccagacc
caaacacctcccagaatgaaccactttccccaaggcctccctcaggaagccaatcatttc
atgggtcacgtggggatgactcagaatcctggcatgtcaggaccccccatgcgtcaccca
gcacagccacctcagcagcatcagcaacctaatcaacaatttctccacaggcccggccag
ggttcagttcatccagagcctgtcgccagccacaacccccagttcccacaaagcccttcg
cggcagcagcaacaacaaccgcagcagcaggcaatgggcggaagaccccaccaaaacatg
ggatttaacatgcacaaccagcaagtcccttccaacactgtaaacagctcagggcagtac
cctccctatccttcgtacggcaaccttaatcagggattagccaacacttcagggatgagt
cccaacttgagccttaccaccagcagcaacagcaaccctaatgctcccgtgacccaggtg
cagcgctaccctgccccgacggggccccagcgctaccccacacctggggctcaacaggga
ccaatgcaccagcagcccattcatgtgaaccaaatcagcacccagcctatgcatccagct
cagaaccaggctacagcccagcagaagctgcagcaacagcatctaccacctccacctcag
ggatcatatgcctcccctccttccatgtcacccatgaggaaccttgctacccctgcaggc
acccctcctccccagcagggccgcccgcctagcgcaggcttgggaaccgatgtgggcggc
taccccggtgtgccacatcaatctcaaggcccgatggctcatgcccagagaggagcctgc
ccagtaaacgcagcacagcagcatccccaccaacagctgccgtcgcttccctcgcacccg
catcctccgccgacccaaatgtatgctgctttgtcgcccaatcacagggcaacgggcgct
caaggaaggcctccagccggcccgggtgcaaaccacacagagccgcaggaccagaggctg
ctcgcccaacaagtgcagtgccagcagctgcagacgcccccattgcctttccagcagcaa
cagctgcagcaggtgcacacccctccctcgattcccccatcacagacacacctggctgcg
caccaccagagctctcctccgtctcagcaggcatgggcacctcctcaccagtcgcctcca
cccatgcagaaagtgcctcacatgcagcattctccatcagacccttccctggagatgata
acatctagtaagacacctgcctcgggcccaaacctccaaccagccaactgtgacatacag
cagacggagagcgagctcaagccaaaaaagaagaaaaagaagaaagccaagacgagcgaa
ggccaggagggtaacgacatcagcggtgaggccggaggagaggcggcttctctgatgaac
gagggagactctcttatgactcccatcgaacagcctgtcgtcgaaaagaagagcaaaaag
aaaccaaaggagaaggagcccaaggaaccgaaagagcccaagactcccaaaaccccgaag
actcccaagacacccaaagaacctaaggaacctaaggagaaaaaagtgaagacagccact
ccgaagcccaagagctccaaaaagcccagtgctaaaaagtctgactcggagtccagtaac
agcaccaagaaagacgcaaagcgcaagagggagccctcagtcacctctgatgttgagaaa
tcaccgccacattcaccggaggaagaggaagatgatggtgttcagaagaggcgatctagc
cggcaggtgaagaggaaacgctacactgaggacctggagttcaaaatctctgatgacgat
ggagatgattctaatggaccaaagtctccttcaaccatgtctgagcagcaggagttgccg
gatgcagagggccctgtggtggagaagatcatggggatgcgcatgggaaagaaagagttg
gcgtctggcgaagaggttgacgttgaggagttttatgtcaaattcaaaggcttctcttac
ctgcactgtcgctggtcagacattgaagagctggagaaggataagagaatccagcagaag
gtcaagaggttcaaggccaagcaggcccttagtaacttcctaagtgagatggatgatgag
cccttcaacccagattatgtggaggtggacagggttctggatgtgtctgaaagcaccgat
gaaaatggagagcttgtaactttgtacctggtgaagtggtgctccttgccctacgaggac
agcacgtgggagttaaaagctgacatcgatcaaggaaagattgaggagttcgagagagtg
atggagcgtgagccgcagctgaagcgtgtggagcgacctcccgccagcgactggcagaaa
tccgagagttccagagaatataaaaacggcaatgcgctcagggaataccagctggaggga
gtcaactggctgctcttcaactggttcaacacacgaaactgcattttagccgatgaaatg
ggtcttggcaaaacaatccagtccatcacattcctctacgagatatacctaaaaggaatc
cacggtcctttcctggtgattgcacctctttccaccattcccaactgggagagggagttc
aggacgtggaccgagctaaacgtagtggtctatcatggaagccaggccagccgaaagact
attcaggcttacgagatgtactacagagacacacagggtcgtgtaataaagggagcctac
aaattccatgcaatcatcaccacatttgagatgatcctgacggactgccccgagctacgg
agtgtgccgtggcgctgtgtgatcattgatgaggctcataggctcaagaacaggaattgc
aagttgcttgagggcctaaagatgatggacatggaacacaaagtcctgctcactggaacc
ccactacaaaacacagtggaggagctcttcagtctccttcatttcctggagcctgacagg
tttccctctgagacgacctttatgctggagtttggagatcttaaaacagaagaacaggtg
caaaaacttcagggcattctgaagcccatgatgctgcgacgattgaaggaggacgtggaa
aaaaatcttgcaccgaaagaagagaccatcattgaagtagagctgaccaatgtgcagaag
aaatactaccgtgccatcttggagaagaactttgcctttctgtccaaaagtggaggcggc
ggtggaggtggaggaggatccaatgttcccaacctgctgaacaccatgatggagctgaga
aagtgttgtaatcacccctacctcatcaatggagctgaggagaagataatggaggagttc
agggagagtcaccccttggaccacccagagttccacctccaggccatggtccaggctgca
ggaaaactggtgctgatagacaagctgctccccaaactgaaggctgggggtcaccgtgtg
ctcatcttttcccagatggtgcgctgtctggacatcctggaggactacctcatccagaga
cggtatccatatgagcgtattgatggcagagttcgaggaaatctccgccaggcagctatt
gaccgcttttcacgaccagactctgaccgttttgtgttcctgctgtgcaccagggctgga
ggcctgggtattaacttaactgcagctgatacttgcatcatatttgactctgactggaac
cctcagaatgacttgcaggcgcaagctcgatgccacaggataggacagagcaaggctgtg
aagatttaccgcctgatcaccagaaactcctacgaaagagagatgtttgacaaggccagt
ctgaagttaggattggacaaggctgtgcttcagtccatgagcgggagggagaatgccgcc
aatggggttcagcagctctctaaaaaggagattgaggaccttctaagaaaaggagcatat
ggcgctctaatggaagaggaggacgaaggatctaagttttgtgaagaagacattgatcag
attttacagagacgaacacagaccattaccattgagtcagaaggcaaaggctcaacgttt
gctaaggcaagttttgtggcctctgggaacagaagcgacatttctctggaggacccagat
ttctggcagaaatgggcaaagaaagcagagctggacctggatgcgatcagcggcaggaat
aatctggtgattgacactcctcgggtccggaagcagactcggcactacagttctatgaag
gaggatgatttgatggagtattcagagcttgagagtgactcagaagacaagcccattcag
aaaccacggaggccccaggaccgagcccaggggtacccccgcagtgagtgcttcagagtg
gagaagaacctgctggtgtatggctggggccgctggggtgacatcctgtcccatggacgc
ttcaagcgcccgctgagggagcgagacgtagagaccatctgccgtgcactcctggcctac
tgcctgcttcactaccgtggagacgagaacatcaagagcttcgtttgggacctcataacc
cctaccgaagatggccagagccgcacactgaccaaccactctggactgtctgctccggtg
ccccgagggcgtaaaggaaagaaggggaagccgcaggctgctcaaactcacttgccacaa
gctgactggcttgctgactgtaatcctgacatcctccttcaagaggacagttacaagaga
catctaaaacaccactgtaacaaagtgctgctgcgggtccgcatgctctactatctgcga
caagaagtcatcggagaccacgccgacagaatcctggagggaactgattcaagcgagttg
gatatctggatcccacaaccgttccacgccgacgtccccactgattggtgggatctcgaa
gcggacaagtccctcctaatcggcgtctttaaacatggctacgagaagtataactctatg
cgtgctgaccccaccctgtgtttcctggagagggtgggcatgcccgatgccaaggccatc
gctgccgagcagaggggagcggacatgatggcagatggtgtcgagggagaggatgaggac
ccagagtacaagccactccggatgccattcaaagatgatctggatgattttacaaactct
cctttggatgataaagacgatgggatggatggcgagactcgggaagtgcctaagcttggt
gagaatgggaaagcaggcaatttgtactggccaccggcctctgccctgacagcccgattg
cgccgcctcatcacggcctatcagcgcactcacaagcgtgagcaactgaggcaggaagcc
atgaccaaacccgaccggcgccgaggccgtcctcgcgatgacatccttgctatggtaaca
gagggaggagcttatgcttcggatggagcggtggcttttatggctgaaggagggcctttc
atggccaagggatcacctttcatgcctgacagcgccgccctgctggctgacggagcggct
tattttaaagagagacggcagagatggacaaggcgtgaagaggccgatttctaccgtgtg
gtatccacattcggtgtggtttatgatgtgcacagacagtgctttgactggtcccagttc
cgtgcttttgctcgtctagacaagaagacagacgaaagcctggaaaaatattactactct
tttgtggccatgtgcaagcgggtgtgtcggatgcaggtcaaatccgaaacagagctgcca
gaccccacccttatcattgaccccattacagaagaacgggcttcacggacgctctatcgt
atcgagctgctgcgacggatcagggagcaggtgttgccgcaccctcagctagatgagagg
ttgagtctgtgccaaccgagccccgacctcccagcctggtgggagcccggacgccatgac
cgagacctcctgcggggtgccgcaaagcacggtgtcagccgtactgactatcacatcctc
aacgaccccgagttgagcttcctggaggctcataggaagttcacacagggcaagggtgca
gaattgcccatcggttctgatcctcttacacctctgaacctgcttaaagatgaggaggtg
aaggaagaacagggagatgtgttggtgcccaaagttgagaatggtgacatggaagaggtc
aaagaaaaaaaacctgaagccctctctcctaaaaaagaagaggaagcaaacgatttgggt
cttaaacacgagcctaaagaggaaaagatggaagtggaggagaaagatgatacaatggag
gttaagaccaaggtagaggagggttgtcctgtggatggtatggctgatgagaagcccatg
attcaggagcccacgacccctgaggacaaaatggctcaggatgagaaagagccaccctca
atcactgaaactaaactttctactgacaaaacctgtaaagaagatgaggaagaaaagata
gatgaggatgacaaatcagaaaaatcttcacaagctgaagctggagccgcctctgagagg
aagaatttcgatgaggagagtaacgcctccttgagcacggcccgtgatgagaccagggac
tgcttcagcgttgatgacgttgagccgtcagcctctcagatgttcagtgaacgttcactg
ttctccttctggcccaaggacagggtaatgatcaatcgtatggacaacatctgtgatgcg
gtcatgaagggcaagtggccttccaacaggaggcagttctttgacttcccaggcctgttg
cctggctacagctccatggcaacggacagccccctgcagaggcggagtcttggtgatctc
tcaatggtgggtcagaccagctatagtggcagtgaggacctcaccatgtcaccacaggtc
aacaaggacgatgctttgagcctgtcggtacctcggcagcgcagacgcaggaggaggaag
gtggagatcgaggcagagcgggctgccaagcgcaggaacctcatggagatggtcgctcag
ttacgagagtctcatgcctcagaaggccaagcacaggccatggacctgaccaaggccttg
cacggcgtgtccgcctcctcctccgccttccctggagccatggcctcctccgcagccctg
aaagcacagatggagcttctgcaagcaggcgcttcctctagaccaagagccaacggctct
ctacttgactctgaactccccaaccggagaaagagaggtcgcaggaaaaatgtggagggg
ttggagctgctctttgtggagaacaagagaggacaactcaatgcggaaaattccgatggg
accaaagcttttgtggatgggcgtgcaaacagacccatgtcatctcctgcacataaagct
cctgttgaagctctagaagagggaagccatcttacaggggaagatggacccagcactaag
gacctacgggagtggctgagacagcaccccacttacactatggatatgcctggatatgca
ccaaagaatgaggaccacctcctttctcagtttgccaagcccaaacagaagagacacaga
tgccgcaatcccaacaagatcgacattaatacgctgactggggaggagagggtccctgtt
gttaatgttaggaatggaagaaagatgggaggagccatggcacctccaatgaaggattta
ccccgctggctggttgaaaatccagaatttgctatcgccccagactggacggatattgtg
aagcaatcaggctttctcccagaggccatgtttgaccgtcttctgactgggccagtagtc
agagaggagggtgtgcgccgcagaggcaggcgacccaaatcagagatcgccaaggcgaca
gcagcagcccaggtggctgccgcagcagcggcggcttccacatccggcgttaatccttta
ctgatgaatgggctgtttggaggtatggacctgaccagtctgcagggcctgcagaacctc
cagagtctccagctggctgctggcctcatgggctttccccctgctctcggagggggagtg
gacgccaagcacgccgcagccatgctgcctctcatgcttcctggcatgggtggcctcccc
aacatgttcagcctgggaggtctgtttggaggaaacctggcggccgcagcgacggccacc
aacggcgcagaacaggcagaatctgaggagaatcccaagccgaagatggacgaggagacc
aaggacgaaggagatgagaatgaggagaaggaagaggataaatcgaccgaaacagagtct
gcagagggaaccggcgatgcagccgcgctgaacgcagcagccgctgccgccaccgccgcc
ggcatgtccaccaacccgctagccttcaaccctttcctactgtccaccatggccccaggc
ctcttctacccatccatgttcttaccccccagcctcggcggcctgggcatcccaggcttc
ccccaagcttctctagctgacctccagagcgctgtgtccggagccttgggggccgccggc
gaggacaaggagcccggtaaagggccccgcacaaatcaggaccagaacgcctccacggct
gacgtggaaactgctgacaacacacttgaagacagtgactcagaggagagccagaacaag
actgctgattcatcagtactagatgatgacctggcagggccggcagaggaaatagactcc
atggagggtggaatggatgatgaggacgatgatgatgatgatgatgaggatgatgaccct
gctgatgaggatgacaaaagtgactaa
DBGET
integrated database retrieval system
