Garra rufa (doctor fish): 141345099
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Entry
141345099 CDS
T11039
Symbol
trip12
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
141345099 (trip12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
grf04121
]
141345099 (trip12)
Enzymes [BR:
grf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
141345099 (trip12)
Ubiquitin system [BR:
grf04121
]
Ubiquitin ligases (E3)
HECT type E3
141345099 (trip12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
TPR_TRIP12_N
WWE
Motif
Other DBs
NCBI-GeneID:
141345099
NCBI-ProteinID:
XP_073706063
LinkDB
All DBs
Position
11:complement(5431347..5490814)
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AA seq
2106 aa
AA seq
DB search
MSNRPNSNPGGSLRRSQRNTAAAQPIDHTLAGRLQPEQVNQKANSPPESRRSNSKASKAP
PSSAVGSARGHASRRNSLSLSVGSHSIPDPDLEAAGTSGTQGRREGSSTRALKRSSASEP
NITFSPSPAKRPKAVSSHLSESSSSGPSAPTTSPEVTEPRKAPASVSNKSKKRRLAAEPA
PARALSKKNVSYPGPSGAPNTPSQKRKKADASSLSSSSSSSLPSSSSAAGPLPPRSEASR
AAKPTKLASKSAASAKAGCSTVTDSSSSSASSSSSSSSSSSAATGANSCAPQGARLKQGK
DQSKARRSRSASSPSPRRSSRDKEQSKAAGSSKFDWTSRFNSKVNLPKPRLSLPGSAKAE
TSSKPGPSGLQAKLASLRKSTKKRSESPPAELPSCRRSTRQKTTGSCASTSRRGSGLGKR
GAAESRRQEKMADSDNNQDGANSSAARTEETPQGASASSSVAGAVGMTTSGESESDDSEM
GRLQALLEARGLPPHLFGPFGPRMSQLFHRTIGSGASSKAQQLLQGLQATGDESQQLQAA
IEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHNFDIMNHASRALTYMMEALPRSSAV
VVDAIPVFLEKLQVIQFIDVAEQALTALEMLSRRHSKAILQAGGLADCLLYLEFFSINAQ
RNALAIAANCCQSITPDEFHFVADSLPLLTQRLTHQDKKSVESTCLCFARLVDNFQHEEK
WHGGTQKWLNLLQQVASRDLLTNIQQLLVLTPPVLSSGMFIMVVRMFSLMCSNCPCLAVQ
LMKQNIAETLRFLLCGASNGSCQEQIDLVPRSPQELYELTSLICELMPCLPREGIFAVDA
MLKKGSAQTTEGAIWQWRDDRGLWHPYNRIDSRIIETAHQNGEDEISLSTLGRVYTIDFN
SMQQINEDTGTARAIQRKPNPLANPNTGGHLEVRREDARAQLMKEDPELAKCFIKTLFGV
LYEVYSSSAGPAVRHKCLRAILRIIYFADAELLKDVLRNHAVSSHIASMLSSQDLKIVVG
SLQMAEILMQKLPDVFSVYFRREGVMHQVKNLAESEVFLTSPPKACTSGTASLCATTITT
ATTTAASNVTPDLGSPSFQHSMDDSLDLSPQGRLSDVLKRKRLPKRGPRRPKYSPPRDDD
KVDNQAKSPTTTQSPKSSFLASLNPKTWGKLGTQTNSANSEPSRTAGVSGLARVPPKDTV
SNNRDKIKAWIKEQASKFVERYFNSESVDGSNPALNVLQRLCTATEQLNLQVDSGVECLE
EISSIVSESDVSSFEIQHSGLVKQMLLYLTSNSERDTISRDERIKRFLHVFFGCPIPGQE
PLGRLDPTENGPLLALVHKMNNCLSQMEQFPVKVHDFPSGNGNGSRGSQALKFFNTHQLK
CQLQRHPDCTNVKQWKGGPVKIDPLALVQAIERYLVVRGYGRIREEDEDSDDDGSDDEID
ESLAAQFLNSGSVRHRLQFYIGEHLLPYNMTVYQAVRQFSLQAEEERESTDDEANPLGRA
GIWTKTHTIWYKPVREDEEGCKDAVGGKRGRAQTAPTKTSPRNAKKQDELWHEGVCPSVT
NPLETYLISDPPEGITFDDPSMEVILLLRVLHSISRYWFYLYDNAACKEIIPTGEFINSK
LTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLD
TNPEINQSDSQDSRVAPRLDRKKRTINRDELLKQAESVMQDLGSSRAMLEIQYENEVGTG
LGPTQEFYALVSQELQRADLGLWRGEEVTLSNPKAGSQEGTKYMFSSRGLFAVPFGRTTK
PAHIAKIKMKFRFLGKLMAKAIMDFRLLDLPLGLPFYKWMLRHESSISSHDLVNIDPGVA
KSIQHLEDIIRQKKRIEQDRSHTRETLQQALESLNMNGCSVEDLGLDFTLPGFPNIELKK
GGKDVPVTIHNLEEYLRLVVYWTLNEGVSRQFESFREGFESVFPLHHLQYFYPEELDQLL
CGSRSESWDVKTLMECCRPDHGYTHDSRAVRFLFEVLSSFDAEQQRLFLQFVTGSPRLPV
GGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPDYSSIEIMREKLLIAAREGQ
QSFHLS
NT seq
6321 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaattccaatccaggggggtcactgcgccgttcacagaggaacaca
gccgcggcccagccaatagaccacacacttgcaggaaggttgcagccagagcaagtaaac
caaaaagcaaattccccacctgaaagtagaagatctaattctaaggcttccaaagccccg
cccagctctgccgtcggctccgcccgcggccacgcctctcgaaggaacagcctctctcta
tccgtgggttcacactcgattccagatccagacttggaagcagcagggacttcgggcacg
caggggagacgggagggcagcagcacccgtgctctcaaacgcagctccgcttcagagccc
aacatcactttttcgcccagcccggccaagcggcccaaagcggtgtccagccacctttcg
gagagttcatccagcgggccgtcggcccccacaacctcacctgaagttacagagccgagg
aaggctccagcgtctgtcagcaacaagtccaaaaagagacggttagcagccgagccggct
cccgccagagccctgagcaagaagaacgtgtcctaccctggccccagtggggccccgaac
accccctctcaaaagcgcaagaaggcagacgcctcttcgttgtcgtcctcctcttcttcc
tccctccccagctcgagcagcgcggcaggccccctgccaccccgcagcgaggccagccgg
gcagccaaacccaccaagctggcgtccaaatcggccgcctcagccaaagctgggtgtagc
accgtgactgactcctcctcttcctctgcctcttcctcatcctcctcttcctcttcctcc
tcggccgccacaggcgccaacagctgtgcccctcagggtgcccggctaaagcagggcaag
gaccagagcaaagcgcgacggtcgcgctccgcgtcctccccttcccccagaaggagcagc
cgagataaagagcagagcaaggctgctggctcctccaagtttgactggacatcccgcttc
aactccaaagtcaacctgccaaagcccagactgtccctgccgggatcggccaaggctgag
acctcctccaagcctgggccctccggactacaggccaaactagcaagtttgaggaagtcc
actaagaagcgtagtgagtctcccccagcagagctccccagctgtcggaggagcacacgt
cagaagaccacgggctcttgcgccagcaccagtcggcgaggctcaggcctgggcaagcgc
ggggcagctgaatctcgccgacaggagaaaatggccgactcagacaataaccaggatggg
gccaattcatcagccgcgcgcactgaggagacaccacaaggggcttcagcgtctagctca
gtggctggagctgttggcatgaccacctctggagagagtgaatcagatgactctgaaatg
ggaagactgcaagctctactggaggccaggggtcttcctcctcacctgtttggcccattc
gggccccgtatgtctcagctgtttcataggaccattgggagtggagctagctcaaaggca
cagcagctgctgcaggggcttcaggctacaggagacgaatcccagcagctccaagctgct
atagagatgtgccagctgctagtgatgggtaacgaggagacgctgggaggattccccgtc
aagagcgtcgtacccgccctgatcacactattacagatggagcataattttgatattatg
aatcatgcatctcgcgccctcacctatatgatggaggctctgccgcgctcctcggctgtg
gtggtagacgccatccctgtcttcctggaaaagcttcaggtaatacagtttattgatgtg
gcagagcaagccttgaccgccctggagatgttgtcacgaaggcacagcaaagccatctta
caagctggaggtctagctgactgtttgctctacttggagttcttcagcatcaacgctcag
aggaatgcattagccatcgctgctaactgctgccagagcatcacgccggatgagtttcac
ttcgtggctgactctctgcccctgctcactcagagactcacacaccaggataagaaatct
gtcgaaagcacttgtctctgttttgccaggctggtggacaactttcagcatgaggagaag
tggcacggaggaacccagaagtggcttaacctgttacagcaggtggcgtcacgggatctc
ctgaccaacatccagcagctgctggtgctcactccacccgtgctcagctccggcatgttc
atcatggtagtgcgcatgttctctctcatgtgctccaactgcccttgcctggccgtgcag
ctcatgaaacagaatatagcagagaccctgcgtttcctgctctgtggcgcatctaatgga
agctgtcaagagcagattgaccttgttcccagaagcccccaggagctttatgaactcacc
tcgctcatctgtgagctgatgccatgtctgcccagagagggcatctttgcggttgatgcc
atgctgaagaagggcagtgcccagactacagagggtgccatctggcagtggagagatgac
agaggcctgtggcacccgtacaaccgcatcgacagccgaattattgaaactgcacaccag
aatggagaagatgagataagtctgtcgacactcggccgtgtctacaccatcgacttcaac
tctatgcagcagataaatgaagacactggcactgcccgtgccattcagagaaaacctaac
cctttggccaaccccaacacaggagggcacttggaggtgcggcgagaggatgcacgcgca
cagctgatgaaggaggaccctgagctggccaagtgcttcataaagactctgtttggggtt
ctgtatgaggtgtacagctcctcagctgggcctgccgtcagacacaagtgccttagagcc
atcctccggatcatctacttcgcagatgcagagctgcttaaagacgtactgcgcaaccat
gctgtgtctagtcacatagcttccatgctgtccagtcaggacctgaagattgtagtgggt
tctctgcagatggctgagatcctcatgcagaagcttccagatgtgttcagcgtttatttc
agacgggaaggtgtaatgcaccaggtaaagaacctggctgaatccgaggtgttcctcacc
agccctccgaaagcgtgcaccagcggcacagctagtctttgcgccaccaccatcaccaca
gcaaccactacagctgcctcgaacgtcacacccgacttgggctcccccagtttccagcac
agcatggacgactcgctggacctcagtccgcagggtaggttgagtgatgttctgaaaaga
aagcgccttcctaaaagaggaccaaggcgtcccaagtattccccacctagagacgatgac
aaagtggataatcaggccaagagtccgacaaccacacagtcccccaagtcctctttcctg
gccagtttgaatccaaagacctggggtaaactggggactcagacaaacagcgccaactcg
gagccatcgcgcactgcaggggtcagcggtctggcacgagtgccacccaaggacaccgtt
tcaaacaacagggataagataaaggcttggataaaggagcaagccagcaagtttgtggaa
cgttactttaattctgagagcgtggatggaagcaacccagcgctgaacgtcctgcagaga
ctctgtactgccacagaacagctgaacttacaggttgacagtggtgtagagtgtctagag
gagatcagcagtattgtatctgaatcagacgtgtcctcctttgagatccagcacagtggg
cttgtgaagcagatgctgttgtatctgacgtcaaacagtgaacgggacactattagtaga
gatgagagaatcaagaggttcctgcatgtgttcttcggttgcccgataccaggacaggaa
cctctgggccgtttagacccaacagagaatggcccactgctggcactggtgcacaagatg
aacaactgccttagtcaaatggaacagtttcctgttaaagtgcatgattttcccagtggg
aacggcaatggaagcaggggttcacaagcccttaagttctttaacactcatcagctgaag
tgccagctgcagagacacccagactgcaccaatgtcaagcagtggaagggcgggccggtc
aaaattgaccccttggccctggtacaggctattgagagatacctagtggttagagggtat
ggaaggatcagggaagaggatgaagacagtgacgatgatggttctgatgatgagattgat
gaatctttggctgcccagttcttgaattctgggagtgtacgtcacaggctgcagttctac
atcggagagcacctgctgccgtacaacatgactgtttatcaggccgtcaggcagtttagc
ttacaggccgaggaggagagagagagcacagatgatgaagcaaatcctctgggacgggct
ggcatctggaccaaaacacacactatatggtataagccagtcagagaggatgaagagggc
tgtaaggacgctgttggagggaagagaggtcgtgcacagacggctcccactaaaacctcc
cctcgaaatgccaagaaacaggacgaactgtggcacgagggtgtgtgtcccagtgtgaca
aacccattagagacatacctcattagtgatcctccagagggcatcacttttgatgaccct
tccatggaggtgattctgctgctgagggtcctgcactccatcagtagatactggttctac
ctgtacgacaatgctgcatgtaaggagatcattcccactggtgagtttattaacagtaaa
cttacagcaaaggccaacagacagttgcaggatccgctggtcatcatgacagggaacatc
cccacttggctcactgagcttggcaagacctgtccattcttcttcccgtttgacacgagg
cagatgctcttctacgtgactgcgtttgaccgcgatcgcgccatgcagcgcctgctcgac
accaacccagagattaaccagtctgactcacaagacagccgtgtcgctccacgccttgac
aggaagaagagaacgataaaccgtgatgagctcctgaagcaagcagagtcagtaatgcaa
gatctcgggagttccagagccatgctggaaattcagtatgagaacgaggtgggaacaggg
ctcggccctacgcaagagttctatgctctggtgtctcaggagttgcagagggccgatttg
ggtctttggagaggagaggaagtcacactctctaaccctaaagcagggagtcaggagggt
accaagtacatgttcagttccagagggttgtttgctgtaccgtttggacgaactaccaaa
ccagctcacatcgccaagatcaaaatgaagttccgttttcttgggaaactcatggctaaa
gccatcatggacttcagattgttggacttgcctctaggtttgccgttctataagtggatg
ctgaggcacgagtcgtccatcagctctcatgatctggtcaacattgatcctggtgtcgcc
aaatccatccagcacctggaggacatcatccgccagaagaagagaatagagcaggacaga
tcacatacgcgggagacccttcagcaggccttggagagtcttaatatgaacggctgctcg
gtggaagatctgggcctggacttcactctgcctggattcccaaacattgagttgaagaaa
ggaggcaaagacgtgccagtcaccattcacaacctggaggaatacctcagattggtggtc
tactggacgctcaacgagggtgtctctcggcagtttgagtcgtttagggaagggtttgag
tctgtcttccctctgcaccacctgcagtacttctatcctgaagagctggatcagttgtta
tgtggcagtaggtcagagtcgtgggatgtgaagacactaatggagtgctgcagaccggac
cacggctacacacatgacagccgtgcagtgcggttcctgtttgaggtgctgagcagtttt
gatgcggagcagcagagacttttcctgcagtttgtcacaggcagccccagacttcccgtc
ggaggattccggagtttaaaccctcccctcaccatcgtccggaagacgttcgagtcgacg
gagaacccggacgacttcctcccgtcggtgatgacgtgtgtgaactacctgaaactgccg
gattactccagcatcgagatcatgcgcgagaaactgttgattgctgcgcgcgagggccag
cagtctttccatctgtcttga
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