Garra rufa (doctor fish): 141345149
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Entry
141345149 CDS
T11039
Symbol
dhx36
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141345149 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grf03019
]
141345149 (dhx36)
03012 Translation factors [BR:
grf03012
]
141345149 (dhx36)
Enzymes [BR:
grf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141345149 (dhx36)
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
141345149 (dhx36)
Translation factors [BR:
grf03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
141345149 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
nSTAND3
ATPase
AAA_14
AAA_19
NB-ARC
ABC_tran
TsaE
TTC3
Motif
Other DBs
NCBI-GeneID:
141345149
NCBI-ProteinID:
XP_073706121
LinkDB
All DBs
Position
11:complement(19819361..19870795)
Genome browser
AA seq
1025 aa
AA seq
DB search
MNYGYGNRRGRRGEGRRYGDGGSRWDGGAGSSGGGRYTGSSERDSEEERGHGWGRRGKHP
PHLKGREIGLWYAKRGGIKRSEAERKSRAVVQMDEQREQHITQLLNSVQRDASRDAHPST
SQSWRMKEEPSGHSYFDGDDPPELQNIKVPKIEPKEEKQENEDELGASVKEKLNDTDLEY
LFQDVVRIPSLDEELKKDQQKKKDNARYLDMLKFREKLPSYEMREKLVGLINANQVLVIS
GETGCGKTTQVTQFILDDFIERGIGSLCRVVCTQPRRISAISVAERVAAERAESVGEGKS
CGYQIRLQSRLPRKQGSVLYCTTGIILQWLRSDPSLSSISHLVLDEIHERSLQSDVLLTI
VKDLLTARKDLKVILMSATLNAEKFSKYFNNCSMIHIPGYTYPVKEYLLEDVVELLRFKP
QHQDRRPRNRRGFMHGQNVQPEKEQKEAEYHESWPCFARTLRDRYSDSTIDALKMMDDDD
KINLELIVALIRHIVMKEDDGAILVFLPGWDNISSLNDLLMADQMFKSDRFIIIPLHSLM
PTVSQTQVFKKPPPGMRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDTQNNIRTMTA
EWVSLANAKQRKGRAGRVSPGKCYHLYNGLRASLLDSYQLPEIQRTPLEELCLQIKILKL
GPIASFLQKTMDPPSDKAIELAITHLVDLNALDRNEELTPLGFHLARMPVEPHIGKLILF
GALLGCLDPVLTIAASLSFKDPFFIPLGKEKIADQRKKLLSQNSRSDHLTIVYAFWGWED
AKKQGSRFEREYCWKNFLSANTLQMLQNMKGQFAEHLLAAGFVSSRDPKDSSSNINSENE
KLIKAVIVAGLYPKVASIRPNHSKKGPKPAKVYTKADGKVCIHPKSVNAEETQFHYTWLI
YHLKMKTTSIFLYDCTEVSPFSLLFFGGDISIQSDQDQETIAVDEWIVFQSPARIAHLVK
DLRKELDVLLEEKIKSPCPVVWSDQGSKDCAVLFAIIDLITTQEKPLLEAPGKATSEPTN
RSLFI
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgaattatgggtatggtaatagacgcggtcggagaggagagggccggcggtacggagat
ggaggttccaggtgggatggaggggctggatccagtggaggtggaagatacacggggagc
tcggagagggactcagaggaagagcggggacatggatggggacgaagaggcaaacatcca
ccccatttgaagggtcgagaaataggactgtggtatgccaaacggggaggaattaaaagg
tctgaggcagagaggaaatctagggctgttgttcaaatggatgaacaacgagagcaacac
attactcagctgctgaactctgtccagagagatgcaagcagagatgcgcacccctccaca
tctcagagctggaggatgaaggaggagcccagcggccacagttactttgatggagatgat
cccccagaacttcagaacataaaagtgccaaaaattgagcctaaagaggagaaacaggag
aatgaggatgagttgggagcaagtgtgaaagagaaacttaatgacactgacctggagtac
ttattccaagatgttgtgcggataccctccctggatgaggagctcaagaaagatcagcag
aaaaaaaaagataacgctagataccttgatatgctgaaattcagagagaagctgccttcc
tatgaaatgagagagaagctggttgggctaatcaatgctaaccaggtactggtaatcagt
ggagagactggctgtgggaagaccacccaggtcactcaattcatccttgatgacttcatt
gaaaggggcataggctctctctgcagggtggtttgcacacagccacggcgcatcagcgcc
atatctgttgcagagagggtggctgcagagcgggcagaatcggtgggagaggggaaatcc
tgtggttatcagatccgtctgcagagtcggttaccacggaaacaaggctcagtgttgtat
tgtacaacgggcattattcttcagtggctccgctcagatccatctctttcaagtataagt
catctggtcctggatgaaattcatgagaggagtcttcagtctgatgttcttctcactatc
gtgaaagacctgttaactgctcgaaaggacctcaaagtaatcctcatgagtgccacgctt
aacgctgagaaattcagcaaatatttcaataattgttccatgatccacatacctggatac
acatacccagtgaaagagtacttactggaggatgtggtggaattgcttaggttcaagcca
caacatcaggaccgcagacctcgcaataggagagggtttatgcatggccagaatgtacag
ccagagaaggaacagaaagaggcagaataccacgagagttggccatgcttcgcccgtacg
ctcagagatcggtactcagacagcaccattgacgcgctgaagatgatggatgatgatgac
aagatcaatctggagcttatcgtagcattgatcagacacattgtgatgaaagaggatgat
ggagcgattctggtgtttcttcctggatgggacaacatcagctccctgaatgatttgctc
atggctgaccagatgtttaagtcagatcggtttatcatcatccccctccactctttgatg
cccacagtgtctcagactcaggtgttcaaaaagccacccccgggcatgcgcaagattgtg
atcgcaaccaacatcgcagaaaccagcatcacgatagatgatgttgtgtatgtgatagat
ggagggaagattaaagaaactcattttgacacccagaacaatatcaggaccatgacagca
gagtgggtgagcttagccaatgccaaacagaggaagggccgtgctggcagagtgtctcct
ggaaaatgctatcacctgtataatggactgagggccagcctcctggatagctaccagcta
cctgagattcaacgcactccactggaagagctttgcttgcaaataaagattctgaagttg
ggacccattgcatctttcctgcaaaaaaccatggatcccccatcagacaaagcaatagag
ctcgccatcacacacctggtggacctgaatgctctggaccggaacgaagagttaactcca
ttaggatttcatcttgcccgtatgcctgtagagcctcacatagggaaattgattctgttc
ggggctcttctgggctgtttggatcctgtgctcaccattgcagccagccttagctttaaa
gatcccttcttcataccactgggaaaggagaagattgcagaccaaaggaaaaaattgctc
tcccaaaactctagaagtgatcatctcactattgtctatgcattttggggctgggaggat
gctaaaaaacagggcagcaggtttgagagggaatactgctggaaaaacttcctttctgca
aacacgctacagatgcttcagaatatgaaaggtcagtttgcagagcatcttttggcagct
ggctttgtgagcagtagggaccctaaagattccagctctaacatcaactcagagaacgag
aagctcattaaggctgtgatcgtagcgggtctgtatcctaaagtggccagtatacgtccc
aaccatagtaagaaggggccaaagccagcgaaggtgtacactaaggctgatgggaaagtt
tgtatccaccctaaatctgtcaatgcggaggaaactcagttccactacacatggcttatt
tatcacctgaagatgaagaccaccagcatcttcctctatgactgcaccgaagtgtctcca
ttttccttgttgtttttcggaggggatatttccatccagagtgaccaggaccaagagaca
atcgcagtggacgagtggattgtgtttcagtccccggcacgcattgctcaccttgtcaag
gacctgaggaaggagctggatgtgttactggaggaaaagataaagagtccatgtcctgtg
gtctggagtgaccaggggtctaaagattgtgctgttctcttcgctataatcgacctcatc
acaacacaggagaaacccctgctggaggccccaggaaaggcaaccagtgaaccaaccaat
aggagcttatttatttaa
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