Garra rufa (doctor fish): 141345238
Help
Entry
141345238 CDS
T11039
Symbol
nlrc5
Name
(RefSeq) protein NLRC5
KO
K22615
NLR family CARD domain containing 5
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
grf04054
]
141345238 (nlrc5)
Pattern recognition receptors [BR:
grf04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
141345238 (nlrc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_NLRC3
LRR_TMOD-LMOD
NACHT
LRR_MHP1-HER1-GIP3
LRR_6
LRR_CARMIL
HTH_NLRC5
NLRC4_HD2
LRR_NLRC4
LRR_4
LRR_NXF1-5
LRR_8
AAA_16
PRAME_C
WHD_NACHT_C
AAA_30
nSTAND3
Atypical_Card
Motif
Other DBs
NCBI-GeneID:
141345238
NCBI-ProteinID:
XP_073706226
LinkDB
All DBs
Position
11:complement(32360745..32384933)
Genome browser
AA seq
1743 aa
AA seq
DB search
MRMERMDWPGDVRTQVDREGSELVELLCKQNSGVLDRIFALVEPKTLDRIQSLINNRDRA
SAIVDYFRTSDRNLCTQFLTTVYQYSENIPLLLETTLVSIIGVGYTPGKSCSALFLDHLQ
SYTDALKSMLLQKHESVAQTVVKDIRLDDTWVYLRHRNPPRGKDRTIQPQASLDNHEAEE
SEHKVSVESLLKTTSRVVMLLGQAGSGKTLLVHCLGRSWAEGSFPSIPLLFLLEFRQLNL
ISRDLSLKELLFLYYPACDDDEEQSDEVFEFILSNPEKVCFIIDGYDEFRAKLTHPQKLK
SSIDPSKPLPMTDLLSGLCNRKFLQGCTVLVTCRPRDVTDMFGSPGFITCELQGFDRLGV
KEYAEHYFHKKGDELKKKAVNLLMDNRHLLSMSHVPGLCHICCVCMDHLFSSDGTDLQLP
SSLTQIYMQILLAYLKRIDEGVVSGMSPLQRHRTKIAEMSQLALKGLDESSIVFMDTNVS
PELQDFGVKSRILSRVKLTREDGSSGCGFTFMHLTMQEFLAALHLMTSQSITESQLKKKL
NLKTRWTTKIDPKTVFTDSLHLYVCGLAAEACTSSLVQLKGAEGTRAWIQKRQSTVRNVL
LGFSGSTSQTGPKIVELCRCAHETQDAKLARAIGSRPQFELRNIRLNAVDMDSLAFVTAA
ADQNVCLDFGGCSIDLDCLEILPSFKNVDHLIFRSRKYDDKFAEALCGILCKLQALRQLN
FISGGLTDVGAANLARVLKDCPHITHLNVSDNSLKDEGIREIAEKLSRLPNISSVLMGKN
SISTDGILTLIEKMAACSSVQEVRVEGNKEISLFFSQSLDTVCENTDLSNTGEPNNVTLK
QCNINVSNVISLCNKLRGFSHITLLDLSNNSLGNKGLKKILDFLPKLGMIQEINVSENAV
DMDGVVMLASALCNQKNLRRVDASEDGMKKLVLRFDTSRRHNSRQLTPNVTGIHLHKKLS
LTHSDIKPVYMTKLCKQLVKCENLLDIEFSHLKLSNESVEKLMLILPEMSSLQLLNLSHV
DLSTNGALLLVKSLADCHRVTAVELRHQAEAFIKFVPEKAEAAICKLTEYKLCKSNVEKL
SRILENCPHLSELDLSHNLLRDEGVKCFVDCLPKLKISSSVSLNGNRITQVGALHLVNSM
NTCEKVVAVEVSLGVEDQSLIKFVQEHVNGKTLRLRECSFEVTHLKKLVEILNRCPRLLT
LELSSNSLHSQGLFSLLDSLVELSTIQTVKLGNNGLSSEQIEYFVKQFSSCHQHRDIRIE
EPWLTGNAVVNLIAKCLTLQPCIKEIRVSRASINIITEANSSLSSTFVTHPERISPALQS
ISFDDCDFEGQHLTPLTLPIQKCHALQDLRFFQLKVDRKCADFFSAVIPFLQNLRSLTLD
LKGAAEDEVETLAEALPDTTAFESLSLSQLVLSDRGAAVLGRALQSVPNLKSINLSRCSG
WTAARGCDLVRGLVQCVLLTEIRLDSVVLDEEGVTILAQGFSRLTSLRRLSLNNIKVVTS
ETFVNGTGILCLLASFKGFRQMEEIELESWRMGDSGTYELMKYVPSWTELVKLSLSDNNV
TDQAGEKLLSALSHCRVLQKLQLSKNQLGQASAAKLTQVLPLLPQLSELNLSENQFGPQG
SLALCDGLMSTKALKILHLTSIGSSDLVGVASSLKHCTSIEDISLSWNGCSDNLAQTLAE
ILPLCTKLKRLDLEANNISTAGATVIAKCLPSCPSIEVIRLWRNPITKDDENLKDQRLNF
SSV
NT seq
5232 nt
NT seq
+upstream
nt +downstream
nt
atgaggatggagaggatggactggccgggggacgtccggacacaggtggaccgggagggt
agtgagctggtggaattgctctgtaaacaaaatagtggtgttctggatcggatctttgcc
ttggtggaacctaaaacactggatcggatacagtcactgatcaacaacagagaccgtgct
tcagccattgttgattactttaggacttcagaccgaaacttatgtacacagtttctcacc
actgtatatcagtacagtgaaaacattcccttacttcttgaaacaacactggtgtcaata
ataggagtaggatacacacctggtaagtcatgttctgcactttttttagatcatttacag
agttatacagatgctcttaaatccatgttactgcaaaaacatgagtcagtggcacaaact
gtagtaaaggacatccgtctggatgacacatgggtgtatttaagacacaggaaccctcca
cgagggaaggacaggactatccagcctcaagcctctctagacaaccatgaagctgaagag
tcagagcataaagtgtctgttgagtctcttttgaaaaccaccagcagggttgtcatgctg
ctgggccaggctggatctggtaagaccctgctggtgcactgcctcggccgtagctgggct
gaaggctccttcccgtctattcccctgctgttcctgctggagttccggcagcttaatctt
atctcacgtgatttgtccttaaaagaactgctttttctgtactatcctgcttgtgatgat
gatgaggaacaaagcgatgaagtgtttgaattcatcctctccaaccctgagaaggtctgc
ttcataatcgatgggtatgatgagtttcgtgccaagcttacgcatcctcaaaagctgaag
agcagcattgacccaagcaaacctctcccaatgacagatctcctctcaggactgtgcaat
cgtaaatttcttcaaggttgcactgttttggtcacctgtagaccacgagatgtgactgac
atgtttggaagccctggtttcataacatgtgagcttcaggggtttgaccgattgggtgtg
aaggaatacgctgagcattacttccataaaaaaggagatgaactcaaaaagaaggctgta
aacttgttgatggacaaccgacacctcctgtcgatgtctcatgtacctggactctgtcat
atttgctgtgtatgtatggatcatctgttctccagtgatggaactgatttacagctacca
tcgtccttaactcaaatctacatgcagatcctcttggcgtacctcaaacgcatcgatgaa
ggtgtggtgtctggtatgtctccactgcagagacacagaacaaaaattgctgagatgagc
cagttggccctcaaaggactggatgaaagcagtatagtcttcatggacacaaatgtgtct
ccagaactccaggattttggtgtcaaaagcaggatactgtctcgtgtgaaactgactcgt
gaggatggatcttcaggatgtggttttaccttcatgcaccttacgatgcaagagtttctt
gctgctctccacctcatgaccagtcagagcatcaccgagagtcaacttaagaagaagcta
aacttgaaaacccgctggactaccaagattgatccaaaaaccgtctttacagactctctc
catctttacgtatgtgggcttgcggcggaggcctgcacgtctagtttggtccagcttaaa
ggggccgaaggcaccagagcttggatacaaaagcggcagtctacggtccgtaacgtttta
ctgggtttctcaggaagtaccagtcaaactggccccaaaattgtggagctgtgtcgatgt
gctcatgagacacaagatgctaagctggcaagggctattggttcaagaccacagtttgaa
ctgcgaaatatcagactcaatgctgttgacatggattctttagcatttgtaacagcggct
gctgatcagaatgtatgtctggacttcggtggctgttcaattgacctggattgtttagaa
attctccctagtttcaagaatgtggatcatctcattttccgaagccggaaatatgatgac
aagtttgcagaggctttgtgtggtatcctgtgtaaacttcaggctttgcggcaattaaat
tttatcagtggaggtctcactgatgttggagctgctaatcttgccagggttttgaaggac
tgtccacacatcactcacctaaacgtcagtgataactctttaaaagatgaaggcattagg
gagattgcagaaaaactatccagactgcccaacatctcctctgttttgatggggaagaac
agcatctccacagatggaatcctcacactcattgagaaaatggctgcctgcagctctgtt
caggaagtccgtgttgagggcaataaagagatcagccttttcttctcacaaagtttggac
acagtctgtgaaaacacagacttgagtaatacaggagagccaaataatgtaacgttaaag
cagtgtaacatcaatgtttccaatgtcatcagcctttgtaataaactcaggggcttctcc
cacataacccttttagatttgtccaacaactcattgggtaacaaaggcctaaagaagatt
ctggactttctgcctaaactaggaatgattcaggagatcaatgttagtgaaaatgctgtt
gatatggatggggtggtgatgcttgcttctgccctctgtaaccagaaaaacctgaggaga
gtggatgcaagtgaagatggaatgaagaagttggttcttcggtttgacaccagcagacgg
cataattcaagacagctgactccaaatgtaactgggatacatctgcataaaaaactcagt
ttaactcatagtgatatcaaacctgtctacatgaccaagctgtgtaagcaactggtaaaa
tgtgaaaacctactggacattgagttctcccatctaaaattatcaaatgagtctgttgag
aagttgatgttgatccttcctgaaatgtcttctcttcaactgctgaacttaagtcatgtt
gacctgtctacaaatggggctttgttattggtcaaatctcttgctgactgtcatcgtgtc
acggctgtagaactgaggcaccaggcagaagcattcatcaagtttgttcctgaaaaagca
gaggcagcaatttgcaagctcacagagtataaactgtgcaaaagcaatgttgagaagctc
tcaagaatactagagaactgtcctcacctgtctgaactagatttgtctcataaccttctc
cgtgatgaaggggtgaaatgttttgttgactgtttgcccaaactaaagatttccagctca
gtgagcctcaatggcaaccgaataactcaagtgggggcactgcatttggtcaactcaatg
aacacctgtgagaaagttgttgctgttgaagtcagtcttggagtggaagatcagtcttta
attaagtttgtgcaagaacatgtcaacggcaaaactcttagactaagggagtgcagtttt
gaggtcacacacttgaagaagcttgtggaaatactgaacagatgccctaggctacttaca
ttagaattgtcttctaattcactccacagtcaaggacttttctctttactggacagcctg
gttgagctgtctacaatccagactgtcaaattaggtaataatggcctgagttctgagcag
attgagtattttgttaaacagttcagcagctgtcaccaacacagagacatcaggattgaa
gagccgtggctgacaggaaatgctgtcgtcaatctcattgccaaatgcctaactctgcag
ccatgcatcaaagaaatcagggtcagccgtgcatccattaacatcatcacagaggcaaat
tccagcctcagctccacttttgtaactcatcctgaaagaatctcacctgctctgcagtcc
atcagctttgatgactgtgacttcgaaggacagcatctcactcctctgacacttccaatt
cagaaatgtcatgccttacaggatttgagattctttcagctcaaagtggacagaaaatgt
gcagattttttttctgctgtgattccattcttacagaatctcaggagcctcacacttgat
ttgaaaggagcagctgaggatgaggtggaaacacttgctgaagcattaccagacactaca
gcatttgagagtctgagtttgtcccagcttgttttaagtgaccgtggagctgcagtactt
ggcagagcgcttcaaagtgtgccaaatctgaagtcgatcaatctgtctcggtgctctggt
tggacagcagctcgagggtgtgacctggtcagaggtctggtacagtgcgtcttgctcaca
gagatacgactggactccgtggtactcgatgaggaaggggtaaccatcctagctcaaggc
ttcagccgtttgacctcacttaggaggctcagcttgaacaacattaaagtggtgacatcg
gagacgtttgtgaatggaactggcatactttgtctactggcctcttttaagggttttaga
cagatggaagagattgagttggaaagttggcgaatgggagatagtggtacttatgagctg
atgaaatatgttccatcatggacagaactagtaaaactaagtctgtcagacaacaatgtg
actgaccaggctggagagaagctactctcggcactatcccactgcagagttcttcaaaaa
ctacagctgtccaaaaaccagcttggtcaggccagtgctgctaaactaactcaagttctt
ccgttgctgcctcagctttcagaactcaatttgtcagagaatcagtttggtccacaagga
tccttggctctttgtgacggtctgatgagcacgaaggcactaaaaatactacatttgact
tcgattgggagttcagatctggttggtgtggcctcatccctcaaacactgtacatccata
gaggacatcagcttgtcgtggaatggatgtagtgacaacctggcacagacactggctgag
attctacccttatgtacgaagctgaaaagacttgacctggaggccaataatataagcaca
gcaggagccacagtgatagccaaatgtctcccatcatgcccctctattgaagtaataaga
ctctggaggaacccaattaccaaagatgatgagaatctgaaagatcagagactgaatttt
tcatcagtttaa
DBGET
integrated database retrieval system
