Garra rufa (doctor fish): 141346335
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Entry
141346335 CDS
T11039
Symbol
obsl1a
Name
(RefSeq) obscurin-like protein 1a
KO
K19574
obscurin-like protein 1
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
grf03036
]
141346335 (obsl1a)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Centrosome formation proteins
3M complex
141346335 (obsl1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
V-set
Ig_4
Izumo-Ig
V-set_CD47
Receptor_2B4
Ig_C17orf99
VEGFR-1-like_Ig-like
Tissue_fac
Motif
Other DBs
NCBI-GeneID:
141346335
NCBI-ProteinID:
XP_073707292
LinkDB
All DBs
Position
12:complement(15722467..15741727)
Genome browser
AA seq
2185 aa
AA seq
DB search
MDVFGGAPRVLGYPRPVLVKCGTDAALKCQIGGDPQPDVIWEWKNECILSEGRYRITQDG
KVYTLYISGVTMEDVGQYICKAKNNIGETYAAATLKVEEEPQELQQTQPAPPPPPQQQNE
VKVIPPEQEIKVMNQQQDGVVQKADPFQDNKPRFLIKPLSLRVDRGEDAAFSCKLSGEPL
PQVVWEKDGKQLNEIYESSHYHVGQQDGGWFQLKIFRTRAPDGGVYMCKAVNNHGEAMTG
AVLLVEPIPEQREGSKTNGYTNGHYSPHQSRAKHSKEPHLNVSKAKKFTVSEGKHAKFRC
YVTGKPKPEIVWKKDGENIEPGRRFLIFEDREGYYTLKVLYCKQQDTGLYICAASNALGN
TLSAVQLSVKGPPVRFKRALQDAEVRERDVAVLECEVPEESISTAWYLEDQRLQQGNKYN
MEQRGTRRRLTIQNVGADDDGVYLCEMPDGGKTIAELAVKGAIVKKLPRRLEVMEGENAA
FFVEVEQDEMDICWFKDGLQLKETHQTIIKSFGKTHILVFVNTSYQDSGTITFMAGRSTT
SSKLRVKTARHCPPICPVSVQMNTEGSNGAILSWSPSPNLQNSTKSVYMLERQEVGSQEW
QRCLTTETGTSAEVLGDSVPCEGDYRFRICCVNKYGRSGHVEFPKVVHLVPGPKIKTPLK
NAVVTEGEDAVFSIELSANLIGTWFLNSQQLQDSGRFSITQSKNQHILRIQQVPNVYDGA
EITFIATGVRDSAALQIKASEVKFLPMSEMDTKKTTEVGNSIVLYCEVSNPTANVQWFKD
GQELHVEEGLNIQSDGNMRRIVIQSAEYIHSGVYTCQSNNDIVTFNVNVEAPPVSFKEIA
EEERQKNAMELDPVVLTCELSRPDAPAHWFKDGVPVLQSDNVTIQSEGTMKRLIIRSASL
VDAGTYICQAGDQTMSFSVNIKEPPVTIVDPKDDIHMERYVSEEVVLNCELSRTNGEAHW
FKDGLKLQESENVRLSAEGPYRKVTILCASKRDSGEYVCDTGGDSVFFQLIITEAPVRIV
SPRESEVDVCILSSERLVLSCEISKAEAEVCWFCDGMEVEENANLKLEEDGIYRRLVIPC
ATIDDTAEYVCETADDSVTFWVKVEEPPVKLSCSKETGSITESLAGEPVVLELEVSRDNA
EVCWMKDGVKVEESSNIIITENGLIRKLTIHFPTPNDSGIYTCNAIDDTMDFKVKITEAP
VKILNRDQIKSNHKVALYDDVVLECELSTANGVVNWYKNGSPIEENERFCFEEEGAFRTL
VILCAELQDSGEYILDAKDDTISFHVTVQEPSVKIIGNSGEPDYQEMVTGDDLILTCEVS
RANAPVKWLFNDKPLVPDERTHIESNGTLRKLTLSNILLSDSGKYMCNAVDDQMITIVKV
QEPPVEFLNKEEVNLVTGYEAEAVTFTAMVSRPNAVVRWLKDWTPISDERFHIASLGLTR
TFTINPLKKLDKGEYTCDANTDEMHFSLLVKDMRIKFVKPLVDKVAHKDGMVTLCCEVCK
AKADVQWNKDGLEIIPSRRFSIRADGTERSLTIHRLTKEDAGEYACESKDDCTSARLRVE
LPRVVEFLTELHNTTVMEGEDATFKCVVSPDDVQLVWLMDGEPIKPSDRFHIDQNSLCHT
LVIRKVQLLDSSRITAEAEGIISKASLKVQEAQVLFTKRMEAVMAEEFGEAILETEVSLE
SGEVQWMRQGVVIQPGPRHKLTQNGCKRILTINNLNLSDRGTYRCETLHDRTQVKLNVEP
RKIVIRKSLMDIETFERETASFEVELSHADVEGVWQKDGLRVKPNNNWRVSCNGRVHGLT
LSNLTLEDTGSIVFSAEGLRTTARLVVKETPVTIIKKLSDVRFEEESAVILECELSRPNV
DVRWLKNGLELKSSKTLRIYSMGRKRCLQILECSTSDSGLYTCEIGDISTSCKLEVYEHE
LEIITGLEDLWIKEDQNAVFMCELSMEDTPGEWYKNGSRIRPTDTIKTRTEGTKHFLLIC
NVKPEDSGEIKFVSKQVETVAYLEVEELPVSIVRPLRDRTALEKHRVILECTVSSTNCDV
TWYKEDQELESTEHMEIIQEGCYHKLVIHQVALEDEGTYSIEVGEHTSTAKLMVEAQSIL
VVKDLEDVEVRAPETACFQCEVSVTLIKPPIWTLNGETLQSGTDVRIENQGTVHKLTFKK
TSTDMSGTVKFTTGKAKNSAKLTVL
NT seq
6558 nt
NT seq
+upstream
nt +downstream
nt
atggatgtttttggaggtgctccacgtgtgcttggttacccgcgcccagttctggtgaaa
tgtggaacagatgctgctcttaaatgtcagattggtggagatccccagccagatgtgata
tgggagtggaaaaacgagtgtattctttctgagggtcgttaccgtattactcaagatggc
aaagtatacaccctttacatctctggggtgacaatggaagatgttggtcagtatatttgc
aaagctaaaaacaacattggagaaacatatgcagctgctacccttaaagtggaagaagag
cctcaagagctccagcaaacacagccggccccaccaccaccaccacaacaacaaaatgaa
gtaaaagtgattccaccagaacaagaaataaaagttatgaatcaacaacaggatggggtg
gtacagaaagcagacccattccaagacaacaagcctcgttttctgatcaaacctctttct
ttgagagttgaccgtggagaagatgctgcattctcctgcaagctatcaggtgaaccttta
cctcaagtggtttgggagaaagatggtaaacagctgaatgagatctatgaaagttcccac
taccatgtgggccagcaagatggtggctggttccaattgaaaattttcagaacaagagcc
ccagatggaggtgtttacatgtgcaaagcagtcaataatcatggagaagcgatgactgga
gctgtgctcctggtagagcccattccagaacaaagagagggaagcaagacaaatggctac
accaatggccattactcaccacaccaatcgagggccaaacactcaaaagagccccacttg
aatgtgtcgaaggctaagaagttcactgtctcagaaggcaaacatgccaaatttcgttgt
tatgtcacaggaaagcctaaaccagagattgtatggaagaaagatggagagaatattgag
ccaggtcgacggtttctcatttttgaggatagagaggggtattacaccctaaaagtactg
tactgtaagcagcaggatacaggactctacatatgtgccgcctcaaatgcattgggaaac
acactgagtgctgtgcaactgtccgttaaagggcctccagtccgatttaagcgagctctt
caagatgcagaggtcagggagagggatgttgctgttctggaatgtgaggttccagaagag
tccatttccacagcatggtacttggaggatcagcggctgcagcaaggaaataagtataac
atggaacagaggggaacacggagaagactaaccatacaaaatgttggggcagatgatgat
ggagtttacctgtgcgagatgcctgatggtggaaagactattgcagaattggcagttaaa
ggtgcaattgtgaagaaacttccacggaggttagaggtaatggaaggagagaacgcagca
ttctttgtggaagtggaacaagatgagatggatatctgctggtttaaagacggactgcag
ttgaaagaaacacatcaaaccattatcaagtcttttggcaaaacacacatcctggtcttt
gtcaatacatcatatcaagactcaggcacgatcacttttatggcgggcagatcaacgaca
agctccaaactcagggtcaaaactgctcgacactgcccacctatctgtcctgtgagtgtc
caaatgaacactgagggttcaaatggtgccatcctttcctggtcaccgtcacctaacttg
caaaactccactaagtcagtgtatatgctagaacgtcaggaagtgggctctcaggagtgg
cagcgatgcctgacaacagagacaggcacttctgctgaggtcttgggtgacagtgtgcca
tgtgagggtgattatcgtttccgtatctgctgtgttaacaaatatggcagaagtggacat
gtggagttccccaaagtagtacatctggtcccaggtccaaagatcaaaacccctctgaag
aatgctgtggtgactgagggtgaggatgccgtgttctccattgagctctctgctaatttg
attggcacgtggttcctgaatagccagcagctgcaggatagtggacgcttctccataact
cagtcaaagaaccaacatattctacgaatccagcaagtgcctaatgtatatgatggagct
gaaatcaccttcattgccactggcgtacgggattcagcggcactacagattaaagcatct
gaagtgaaattcttacccatgtcagagatggacaccaagaagaccactgaggtgggaaat
tccattgtgctttactgtgaggtgtccaatcccacagccaatgttcagtggtttaaagac
ggacaggagctacatgtagaggagggtctgaatatccaatcagatggcaacatgaggagg
atcgtcattcagtcagcggagtacattcattctggagtctacacctgccaatcaaacaac
gatatagtcacatttaatgtgaatgttgaagccccccctgtgtcattcaaagagattgcg
gaggaagagaggcagaaaaatgctatggaactggaccctgtggtcctgacatgtgaactc
tcccgaccagatgcacctgcccactggtttaaagatggagttccggtccttcagtcagac
aacgtcaccatccagtctgaaggcaccatgaaaagacttataattcgttcagcatcactg
gtagacgctgggacgtatatttgccaagcaggcgaccaaaccatgtcattttctgtcaac
attaaagaacctccggttacaattgtggacccaaaagatgacatccacatggagcgttat
gtctctgaggaggtagtcctgaactgtgagctctctcgaacaaatggagaggctcactgg
tttaaagatggcctaaagctccaggagagtgagaatgtcagactcagtgctgaagggcca
tacaggaaggtaaccattctctgtgcttccaaacgggattctggagagtatgtatgcgac
acaggtggcgactcagtattctttcaactcattattacggaggctccagtccgcattgtg
tcccccagagagtcagaggtagatgtgtgtatactgagctctgagaggctggtcctgagc
tgtgagatttccaaagcagaagcagaagtctgctggttttgtgatggcatggaggtggaa
gagaatgctaacttgaaactggaggaagatgggatttaccgcaggctggtgattccctgt
gctaccattgatgatactgcagaatatgtatgcgagactgcagatgactcggtcacattt
tgggtgaaagtagaagagccccctgttaaactttcttgctccaaggagacaggcagcatt
acagagagtttggctggtgaacctgtagtcctcgagcttgaagtttcccgtgataatgca
gaggtgtgctggatgaaagatggagtgaaggtggaagagagcagcaacatcataattact
gagaatggcctgatacgcaagcttaccatccattttccaactccaaatgattctggaata
tatacctgcaatgccatagatgacacaatggattttaaagtcaaaattactgaggcacca
gtaaaaatcctgaacagagatcagatcaagagtaaccacaaggttgcattatatgatgac
gttgtattggagtgtgagctgtctacagccaatggtgtagttaattggtataaaaatgga
agtcctattgaggagaatgaacgcttctgttttgaggaggaaggtgccttcagaacacta
gtcattctctgtgcagagctgcaggactctggagaatatattcttgatgccaaagatgat
acaatttcatttcacgtcaccgtacaagagccatcagtgaagatcattggcaactctggt
gaacctgattaccaggagatggtgacaggagatgatctcatcctaacttgtgaggtttct
cgagccaatgcaccagttaagtggctattcaatgataagccactggtccctgatgagcgc
acgcacattgaaagcaatggaacactccggaaactgactttatccaacatcctcctttct
gactctgggaaatacatgtgtaatgctgttgatgaccaaatgataaccattgttaaagtt
caagagcctcctgttgagtttctcaacaaagaagaggtaaacttggtcactggttatgaa
gcagaggctgtcacttttactgccatggtttccaggcccaatgccgtagtgcgatggctt
aaagactggactccaataagtgatgaacgttttcacatagctagcctgggcctgacacgc
actttcaccatcaaccctttaaagaaacttgacaaaggagagtacacatgtgatgcaaac
acagatgagatgcacttcagcctcctggtcaaagacatgcgtattaaatttgtgaagcca
ctggttgacaaagtggcccacaaagatggtatggtcacactttgctgtgaggtatgcaag
gccaaagcagatgtccagtggaacaaggatggattggagattattcccagtcgccgcttc
tctatccgtgccgatggaacagagaggagtctcacaatccatcgtctcaccaaagaagat
gctggagagtatgcttgtgagtccaaagatgactgcaccagcgccagattaagggtagaa
ttgccccgcgtggtggaattcctcacagagcttcacaataccacagtcatggagggtgag
gatgctacctttaagtgtgtggtctcccctgatgatgttcagttggtctggctcatggat
ggagaacccatcaaacccagtgatcgcttccatattgaccagaatagcctctgccatact
ctggtaatccgcaaggttcagctgttggattcctcccggatcactgcagaggctgagggt
atcatttctaaagccagcctcaaggtccaggaggcacaggtgttgttcacaaagagaatg
gaggcagtgatggctgaggagtttggagaggctatattagagacagaagtgagtctggag
tctggagaggtgcagtggatgagacagggggtggtgatccagccaggacccagacataaa
ctcacccagaatgggtgcaaacgcatcttgaccatcaataacctcaacttgtctgatcga
ggcacctaccgctgtgagactctccatgaccgtacacaggtcaaactcaatgtggaaccg
aggaagattgtcatacgcaagagtctgatggacatcgagacatttgagagagagacggca
tccttcgaggtggaactttctcatgccgatgtggagggtgtgtggcaaaaagatggtctg
cgtgtcaaacccaataacaactggcgtgttagttgcaatggacgagtacatggtctcacc
ctctccaacctcaccttagaggataccggtagcattgtcttctctgcagaaggtctgaga
actactgccagactggtagtcaaagaaacaccagtaacgatcattaagaagctgtctgat
gtcaggtttgaagaggaatctgcagtcattttggagtgtgagttgtctaggccaaatgtg
gatgtcagatggctaaagaatgggttggagctcaaatcgagtaagactttgaggatttat
tccatgggacgaaaacgctgtttacagatcttggaatgcagcaccagtgactcaggcctt
tatacttgtgaaataggtgacatcagcacttcctgcaaacttgaggtctatgaacatgaa
ttagagatcataactggcttggaggatctttggattaaggaggaccagaatgctgtcttt
atgtgtgagctgtctatggaagatacgcctggggaatggtacaaaaatggcagcaggata
cgccccactgacaccatcaagactcgtacagagggcacaaagcatttcctgcttatatgc
aatgtcaagccagaggattctggagaaatcaagtttgtttccaaacaagtggagacagtt
gcttatcttgaggttgaagagcttcctgtaagcattgtccgtcccctcagggatcgtaca
gcactggaaaaacatcgagtcattctagaatgcactgtgtcatccacaaactgtgatgtc
acctggtacaaagaagatcaagagttggaatccacggaacacatggaaataatacaagaa
ggctgttatcataaacttgtcatccaccaggtggcgctggaggatgagggaacctacagt
attgaggttggagagcacacatccacagccaagctgatggtggaagcccagtctattcta
gtggtaaaggatttggaggacgtggaagtgagagctcctgaaacagcttgcttccagtgt
gaagtctctgtgaccctcatcaaacctccaatctggactctgaatggggagaccctgcag
tcagggaccgatgtccgaatagagaaccaagggactgtccataaactgacattcaaaaaa
actagcactgacatgagtgggacagtcaagtttaccacagggaaagccaagaatagtgcc
aaactgacagtgttgtag
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