Garra rufa (doctor fish): 141346487
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Entry
141346487 CDS
T11039
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141346487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
grf03041
]
141346487
03009 Ribosome biogenesis [BR:
grf03009
]
141346487
Enzymes [BR:
grf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141346487
Spliceosome [BR:
grf03041
]
Complex A
U1 snRNP components
U1 related factors
141346487
Complex B
141346487
Ribosome biogenesis [BR:
grf03009
]
Eukaryotic type
Pre-60S particles
Helicases
141346487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
141346487
NCBI-ProteinID:
XP_073707462
LinkDB
All DBs
Position
12:18466452..18530020
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AA seq
616 aa
AA seq
DB search
MPGYSDRERGRDRGYGSSAPRFSGGHSGPPSVKFGNPGERLRKRHWNLDELPKFEKNFYK
EHPDVTRRPMQEVEHYRRGKEVTVKGRDCPKPIIKFLEANFPNYVMDVISKQSWSEPTPI
QAQGWPLALSGKDMVGIAQTGSGKTLAYLLPAIVHINHQPFLEHGDGPICLVLAPTRELA
QQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLR
RCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVQI
NIGALQLSANHNILQIVDVCNDGEKDDKLLRLLEEIMSEKENKTIIFVETKKRCDELTRR
MRRDGWPAMGIHGDKSQQERDWVLNEFKYGKACILIATDVASRGLDVEDVKFVINYDYPN
SSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLIQMAEDRGG
RSRGGHSGYKDDRRDRYSGGGRRDFGSYRDRNSDRGYGSGPKVQSGGYGGSSYDKINNSS
SSYGNGYGGNGQVSYNTVNSVVAFGNQNFPNQSFPGNQAPAQNGIIHPQYPFNPPQPPQQ
PPQPMVPYPMPPSFTQ
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattcagatagagaacgcggcagagaccgagggtatggtagcagtgcccct
cgatttagtggaggccacagtggtcctccttcagtgaagtttgggaaccccggtgagaga
ctacggaaaagacactggaatcttgatgaactccccaagtttgagaaaaatttctacaaa
gagcaccctgatgtcacacggagaccaatgcaagaagtggaacactaccggagaggcaaa
gaggtgaccgtgaaaggcagagattgtcctaaacccatcattaagtttcttgaggcaaac
ttccccaattatgtgatggatgtgatctctaaacagtcctggtctgagcccacacctatc
caggcccagggatggcctttggcccttagtggaaaagacatggttggcattgctcagaca
ggatctgggaaaaccctggcttatttgctgccagccattgtacatattaaccaccagcct
ttcctggaacatggtgatggccctatttgcttagtgctggctcccactcgtgaactggca
cagcaggtgcaacaggttgctgctgaatatggaagagcttcccgcctgaagtccacttgt
atctacggtggagcacccaaaggacctcagatcagagatcttgaaagaggtgttgaaatc
tgcatcgcaacccccggcagattgattgatttcctagaggcaggaaaaactaacctacgc
cgctgtacctacctggtccttgatgaggctgatcgtatgctggacatgggatttgaacct
caaatccgcaaaattgttgatcagattcggcctgacagacagactctgatgtggagtgct
acctggcccaaagaagtgcgtcaacttgctgaggattttctgaaggagtatgttcagatt
aatataggtgctctgcagcttagtgccaaccacaacatcctgcagatagtggatgtctgc
aatgatggagaaaaagatgacaaacttctgaggttgttggaggaaataatgagtgagaag
gagaataagacaatcatttttgtggagacaaagaagagatgtgatgagttgaccagaagg
atgaggagagatggctggcctgctatggggattcatggagacaagagtcagcaggaaaga
gactgggttctgaatgagtttaagtatgggaaggcctgcatcctgattgcaacagatgtt
gcctcacgcggattagatgtggaagatgtcaaatttgtcatcaattatgactaccctaac
tcatctgaagactatattcatcgcattggaagaacagcgcgcagtcaaaaaacaggcact
gcttacaccttctttactcccaacaacatgaaacaagccagcgatctcatttctgtcctc
cgagaggcaaaccaggccatcaatccaaaactgatccagatggcagaggacagaggaggt
cgttctcgtggcggtcacagtggctataaggatgatcgtcgagatcggtattctggtggg
ggtaggagagatttcggtagttacagagatagaaatagtgacaggggttatggtagtgga
ccaaaggtacagagtggaggctatggaggcagcagctatgacaaaattaacaatagcagc
agtagctatggtaatggctatggtggcaatggacaggtcagctacaatacagtgaactca
gttgttgcctttgggaatcaaaacttcccaaaccagtcatttcctggaaaccaggctcca
gcccagaatgggataatccacccacagtacccatttaatcctcctcaaccacctcagcag
ccaccacagcctatggtgccctaccccatgcccccttctttcacccagtag
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