Garra rufa (doctor fish): 141346640
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Entry
141346640 CDS
T11039
Symbol
rbl1
Name
(RefSeq) retinoblastoma-like protein 1
KO
K04681
retinoblastoma-like protein 1
Organism
grf Garra rufa (doctor fish)
Pathway
grf04110
Cell cycle
grf04218
Cellular senescence
grf04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
141346640 (rbl1)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
141346640 (rbl1)
04218 Cellular senescence
141346640 (rbl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
grf03000
]
141346640 (rbl1)
Transcription factors [BR:
grf03000
]
Eukaryotic type
Other transcription factors
Pocket domain Rb
141346640 (rbl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RB_A
RB_B
DUF3452
TFIIB
Rb_C
Motif
Other DBs
NCBI-GeneID:
141346640
NCBI-ProteinID:
XP_073707672
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All DBs
Position
12:41222165..41236865
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AA seq
1046 aa
AA seq
DB search
MRGDETDTESVKSADGSIRSNFEALCQELNMDEETAAEALQNFRSICNTYTLEGDIIHWL
ACSLYAACRKSSIPTVGRGVMEGNCVSLTRILRSAKLSLIQFFSKMKKWSDMSNLSQDFR
SRIGCLERNFEVSTVIFRKFEPIFLDMFQNPQGEPPRMPRSRKHRRLPCHISDVFKFCWT
LFVYTKGNFRMIGDDLVNSYHLLLCCLDLVFCNALMCSNRKDLINQYFRGMPKDTENLEE
MPSVIDKLCELHDGLVVEAKGIKEHYFKPYIKTLFEKRILKGDADTLIELLDTPNFQDNN
KAINREYEEYVLTVGDFDERVFLGADADEEIGTPRKATAEPPSGHLSARMQVENNLQQHF
EKTRSLAPSTPLTGRRYLKEKEVLVTPVSSATQSVSRLQSMVSGLRNAPSDALAQIFNSC
SRNPTESILNRVKTMGEKFKQAYTKPTDDLPGAHMDFAENRLKLAEILYFKILENIMTQE
MKRLQGKDMAVLLEQEVLHCSLLACCLEVVLFAYSSQRTFPWILEVFQIPAFYFYKVIEV
FIRSEEGLSRDMVKHLNSIEEQVLESKAWTGDSALWTALTNANNKVPTVEEVNFPSNFDT
GNNVGGPTHLPLVALSPIIHPRIREVRTGLGSSARKDVPQSPISLHDRYSSPAAGSAKRR
LFGDDPPPQSPVKRISVTPIKIIPSAMDNNQNTTATTTLLSMATANGQHLTIPLPVVKND
SGGITVIQLQTNEMNPLTAQVLLTASPSRATAPPASSDTQPPTVNKPRRTGSLALFFRKV
YHLASVRLRDLCLKLDISSELRGKIWTCFEHSLLHCTDLMKDRHLDQMLLCAVYIISKIT
KEEHTFQDIMKCYRTQPQAHSHVYRSVLLKRRPREQQTDENMEVDPPADQSNERTEQADS
ESEERGDLIQFYNSVYVLKMKSFALKYALSTLDNKMEAPPLSPFPSVRAQPLSPRRVSQR
HSIFVSPHKNGPCLTPSTAYTYKFTGSPSKELSDINQMIRQGGVSKKRAFTMEGDETESP
SKCLRQESDDVLLKRLQDVVSERASL
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgcgtggagatgaaacggatacggagtccgttaaatcagccgatgggtcgattcggagt
aatttcgaggcgctttgtcaggagctcaatatggacgaagagacggcagcagaagcgctt
cagaacttcaggtccatctgtaacacctacacgctggagggtgatatcattcactggctg
gcctgctctctgtatgctgcctgtaggaagagctccattcccacagtgggacggggtgtg
atggagggcaactgcgtttcccttacaaggatcctgcgctcagcgaagctcagtttgatc
cagttcttcagcaagatgaagaaatggtcggacatgtcgaacctctctcaggatttccgc
agccgcataggttgcctggagcgcaattttgaagtgtcaacagtgatttttcgtaaattt
gagccaatatttctggacatgtttcagaatcctcagggcgaacctccccggatgcctaga
agtcgcaaacaccggcgtcttccgtgccacatcagtgacgtcttcaagttctgttggact
ctctttgtgtacacaaaaggtaatttccgcatgattggcgatgacctggtcaactcctac
catctcctgctctgctgtctggacctggtattttgcaacgctctcatgtgttccaacagg
aaagatctcatcaatcaatacttcagaggaatgccaaaggacacagaaaacttggaggaa
atgccctctgtcattgacaagctgtgtgagctgcatgatgggttggtggtggaggccaaa
ggcataaaggagcactacttcaaaccctacataaagacactgtttgagaaaagaatatta
aaaggtgatgctgatactctgattgagttattggataccccaaatttccaagacaacaat
aaagccataaatcgtgagtatgaggaatatgtgttgactgtgggggattttgatgagcga
gtgtttttgggagccgacgcagatgaggagatcggcacacctcgcaaggccacagctgag
cctccatcaggtcatctatccgcccgcatgcaggtggagaacaatcttcagcagcacttt
gagaagacacgctcccttgctccctctacacctctaacgggtcgacggtatctgaaggag
aaagaggtgctggtcacccctgtttcctctgctacccaaagtgtgagtcgactgcagagc
atggtgtctggtctccgaaatgctccaagtgatgctctggcccaaatctttaattcctgc
tctcgaaatcccactgaatccattctgaaccgagtgaagaccatgggagagaagtttaaa
caagcctacaccaaacccacagatgacctgccaggagcacatatggattttgcagagaat
cgtctgaagctggcggagatcttgtactttaagatcctggagaatatcatgactcaagag
atgaagagattacaaggaaaagacatggcagtcttgttggagcaggaggtgctccattgc
tccctgttggcgtgctgtctggaggtggtgctgtttgcatacagctctcaaagaaccttc
ccctggatactggaagtttttcagattccggctttctacttttacaaggtgattgaggtg
ttcatccgctctgaggagggtttgtcccgagacatggtgaagcatttgaacagtatagag
gagcaggtgctagaaagcaaagcctggacaggagactctgctttgtggactgcactcacc
aacgctaacaataaagtccccactgtagaagaggtgaattttcccagtaactttgacact
ggcaacaatgtgggtggtcccactcaccttccactggtggcactatcccccatcattcat
ccccgcatcagagaggtccgcacaggcctgggctctagtgcacgcaaagatgtccctcag
tctcccatctctctccacgaccgctacagttcacctgcagctggcagtgccaagagacgc
ttgtttggtgacgatcctccaccacagtccccagtgaaaagaatctcagtcactcccatc
aaaatcattcccagtgccatggataacaaccagaacactactgccacaacaactctcctc
tccatggcgaccgcaaatggccagcatctcaccattccactgccagtggtaaagaacgat
tcaggcggcattacggtcatccagcttcagaccaatgagatgaaccccctcaccgctcaa
gtcttactgaccgcctcccccagccgagccacagcaccacccgccagctccgacacacag
ccgccgaccgtcaacaaaccccgccgtacaggatctctcgccctcttcttcaggaaggtg
tatcacctagccagtgtgcgtctgcgagacctgtgtctgaagctggatatctcatcagag
ctgcgagggaagatctggacgtgttttgaacactctctgctgcactgcactgacctgatg
aaggacagacacctggaccagatgctgctctgtgccgtctacattatatcaaagatcaca
aaagaagagcacacttttcaggacatcatgaaatgctacagaacccaacctcaggcccac
agtcatgtgtaccgcagtgttttactgaagaggcgtcccagagagcagcagacggatgag
aacatggaagtggatccgccagcagaccagtccaatgagaggacagaacaggctgacagc
gaatcggaagaaagaggagacctcatccagttctacaactctgtttatgtactaaagatg
aaatcattcgctctcaaatatgcactttctacgcttgataacaagatggaggctcctcca
ttatctccgttcccatcagttcgcgctcagcctctctctcctcgccgtgtatctcagaga
cactctatctttgtctctcctcataaaaatggcccatgtctcactcccagtacggcctac
acatacaagttcactggcagcccatcaaaggagctgagtgacataaaccagatgatccgt
cagggtggggtgagcaagaagcgggcgttcaccatggaaggcgacgagaccgagtctcca
tctaaatgcctgcggcaagaaagcgacgacgtgctgctcaaacgcctgcaggatgtggtc
agtgagagagcgagtctctga
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