Garra rufa (doctor fish): 141346646
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Entry
141346646 CDS
T11039
Symbol
smarcc2
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF complex subunit SMARCC2
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
grf Garra rufa (doctor fish)
Pathway
grf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
141346646 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
grf03021
]
141346646 (smarcc2)
03036 Chromosome and associated proteins [BR:
grf03036
]
141346646 (smarcc2)
Transcription machinery [BR:
grf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
141346646 (smarcc2)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
141346646 (smarcc2)
PBAF complex
141346646 (smarcc2)
GBAF(ncBAF) complex
141346646 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM-assoc_3
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
PaaA2
Motif
Other DBs
NCBI-GeneID:
141346646
NCBI-ProteinID:
XP_073707676
LinkDB
All DBs
Position
12:32880227..32905200
Genome browser
AA seq
1032 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTKLPMKCFLDFKSGGALCQILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSVVQNNCLSRPVIYLSSEIEPKLLGKLKDIIKRHQGSVTEDKLSSSHVVVP
IPASLEDEEWVRPVMKRDKQMLLHWGYWPDSYDTWISASEVEAAVEDPPTAEKPRKVHAK
WILDLDQFNEWMNEEDYEVGEAGPRRKRISAKTLTDEVSAPDERRDKKPSSAKKRKRSPS
PSPTPPPQESKKKNTKKGPTTPYTKSKRGQREEEQEDLTKDLDEPSPVPAVEEATLPKTV
TKKDSDSTPVKGGTMTDLDEQEDESMETVGKEEEEGSPSVKGEPVKGSDLHEDNVTEQTH
HIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLT
STACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSLV
PLQPKATQTSSSQQMLTFPEKVKDKPADLQNFGLRTDVYSKKSGPAKTKNAASATREWTD
QETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDTSSSLGPLAYQP
IPFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVEEAA
RASGRQDPLYGLEGSGIAGTGLEDSDKXNDVXYFPNINTCGTPMSVKFXESKEGASEEEE
KQGENGKKEEERVREGETERETEKTDSEMADGEKEKERKEGSEEGQRDGESEGEKKAKVE
RDVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELE
TIMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQHQHHSNQPGNQSGST
PSVPHQPVTNASAPPPTQSPASVSVPNAHSEAPPPASHSSPPTNAQTGAVHDSSTPLPGD
SLYPNAPVPPTQ
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atggcggtacggaagaaagacggcggcccgaatgtaaaatatttcgaagcgtctgatacc
gtctcgcagttcgacaatgtccgggtttggctgggcaagaattataaaaagtatattcaa
gcagagccccccaccaataaatctttgtcgagcctggtggttcagctgcttcagtttcag
gaggaagtgtttggccggcatgtcagcaaccctccactcactaaattaccgatgaagtgt
tttttggatttcaaatcgggaggagctctgtgtcaaattctggctgctgcctacaagttc
aaaagtgatcaaggatggaggagatttgacttccagaatccttcaagaatggatcgcaat
gttgaaatgttcatgactatagaaaaatctgtggtacagaataactgtttgtcccgacct
gtgatttacctgagttcagagatagagcccaagctactaggaaaactgaaggacatcatc
aaacgacaccaggggtctgtgactgaagataagctgtccagctctcatgtagtggtgcct
attcctgctagtctggaggatgaagagtgggttcgtcctgtaatgaagagagacaaacag
atgctgctacactggggctactggcctgatagttatgacacatggatctcagccagtgag
gtggaggctgctgtggaggatccgcccactgctgagaaacccaggaaggtccatgccaag
tggattctggacctggatcagtttaatgagtggatgaatgaggaagactatgaggtggga
gaagcagggccgaggaggaagagaatttcagcaaagacacttacagatgaagtgagcgct
ccagatgaaaggagagataaaaaacccagcagtgccaaaaaaaggaagcgctccccgtct
ccatctcctacccctccacctcaggagagcaagaagaaaaacaccaagaaagggcccact
actccctacacaaagtctaaacgaggacagagagaggaagaacaggaagacctgactaaa
gatttagatgaaccctcacctgtgcctgcagtggaggaagcaacactacctaaaacagtg
actaagaaggactcagattctactccagtaaaaggaggcactatgactgacttggatgag
caagaggacgaatctatggagactgtagggaaggaggaagaagaaggttctccgagtgtg
aagggagaacctgtgaagggttcggaccttcatgaggataatgtcactgaacagacccat
catatcattatccctagctatgctgcttggtttgactataacagtgtccatgctatagag
cgcagagcactacctgagtttttcaatgggaagaataagtcaaagactcctgaaatttat
ctggcgtaccgtaacttcatgatcgacacgtacagactgaacccacaggagtatttgacc
tccacagcttgccgtaggaacctggctggagatgtttgtgccattatgagggttcatgca
tttctggagcagtggggcttgattaactatcaggtggattcagagagtcggcccactcct
atggggcctccacccacctcacactttcacgtgttggcagatacgccatcaagcctggta
cctctacagccgaaagcaacccagacttcatcctctcagcagatgctgacattccctgaa
aaagtaaaggacaaaccggccgacttgcagaactttgggttgaggacagatgtgtacagc
aagaagagcggcccagctaaaactaaaaatgctgccagtgccactcgggaatggacagac
caggagacgctgctactgctggagggtctagagatgtataaagatgactggaataaagta
tcggagcatgtgggtagccgcacacaggatgaatgcattctccacttcctgcgtctaccg
attgaagacccctacctggaggacacctcctcctccctgggcccactggcctatcagcca
attccgttcagtcaggcggggaatcctgtcatgagtactgtagcattcctggcctctgtg
gtcgaccctcgagtggcttccgctgcagctaaatcagcacttgaggagttctctcgaatg
aaggaggaggtaccagctgcgttggtggaggctcatgtgcgtcgagtggaggaggcggcc
agagcaagcgggaggcaagaccctctctacggcctggagggtagcggcatcgcaggaact
ggccttgaagattctgacaaacngaacgatgtatgatattttcctaatattaacacatgt
ggcactcctatgtctgtgaaattttaggagagcaaagaaggggccagtgaggaggaagaa
aaacaaggagagaacggcaagaaagaggaagaaagagtgagagaaggggaaacagagaga
gagacggagaaaacagactcagaaatggctgatggtgaaaaggagaaagaacgaaaagag
ggatcagaagagggtcagagggatggagagagtgaaggagagaagaaagcaaaggtggag
agagatgtaggagagggaaacctggccaccgctgctgcttctgcactggctgctgctgca
gtgaaagctaagcacttggcagcagtagaggaaagaaagatcaagtctctggtcgctctg
ctggtagagacccagatgaagaagctggagatcaaactcagacactttgaagagctggaa
accatcatggacagagagagagaggcgctggagtatcagaggcagcagcttcttgccgat
cgtcagtcatttcacatggagcagttgaagtatgcagagatgagagcccgacagcaacac
ttccagcagatccaacaccagcaccatagcaaccagcctggcaatcagtctggcagtact
ccatctgtaccccaccagcctgtcactaacgcctctgccccgcccccaacacaaagcccc
gcctccgtgagcgtccctaatgcccacagtgaagctcctccacctgcttctcacagttct
ccacccaccaacgcacagactggagcagtgcatgattccagcactccactaccaggggat
tcgctttatccaaacgcccctgtgcctccaacacagtaa
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