Garra rufa (doctor fish): 141346674
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Entry
141346674 CDS
T11039
Symbol
rad54l
Name
(RefSeq) DNA repair and recombination protein RAD54-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
grf Garra rufa (doctor fish)
Pathway
grf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
141346674 (rad54l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
grf03400
]
141346674 (rad54l)
DNA repair and recombination proteins [BR:
grf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
141346674 (rad54l)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
Rad54_N
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
141346674
NCBI-ProteinID:
XP_073707707
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All DBs
Position
12:4699533..4716975
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AA seq
737 aa
AA seq
DB search
MRRSLAPSQVAKRKQEPDSDDEEWEPEIASQSKRDCRENYISPYRKPLTPLTNRPLCTDG
NEHEALIRKILSKPFKIPIPNYTGSLGLRALGLRRAGVRKALHDPFEDGALVLYEPPAVS
AHELIKADKEKLPVHVVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSFGCIMADEMGL
GKTLQCIALMWTLLRQSPDFKPEIDKAIVVSPSSLVRNWYNEVGKWLGGRVQPLAIDGGS
KDEIDRKLESFIFQHGIRVATPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQ
TYQALNAMNAQRRVLISGTPIQNDLLEYFSLVHFVNAGILGTAQEFKKRFEIPILKGRDA
DASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCKLTPLQTELYKLF
LKQAKPVESVQSGKISVSSLSSITSLKKLCNHPALIYEKCLAGEEGFDGAMDLFPQNYSI
KAVEPQLSGKMLVLDYVLAMTRTTTSDKVVLVSNYTQTLDLFEKLCRSRRYLYVRLDGTM
SIKKRAKIVERFNNPSNPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARV
WRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFSL
NEETLSDTHDRFRCRRCINSRQVRPPPDDSDCTCDLSNWHHCSDKRGLRDPVLQASWDAA
VSFVFHQRSHEDQRGVV
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgaggagaagtctagcacccagtcaggtggccaaaagaaaacaagagccagattcagat
gatgaggaatgggaacctgaaatcgcatcacaaagtaaaagagactgtagagaaaactac
atctctccctacagaaaacccctgacaccgctcacaaacagacccctgtgcactgatggc
aatgagcatgaagcattgattcgcaagatcttatcaaagccatttaaaattcccatccca
aattatacaggctcattgggtctgcgggctctgggtttgaggcgggccggagtgaggaag
gctctgcatgacccgtttgaagacggagctctggttctgtatgagccgcctgccgtcagc
gctcatgagctcatcaaagctgacaaggagaagttaccagtgcatgtggttgtcgatcca
gtgctcagtaaagtgcttcgaccccatcagcgagagggtgtgaagttcctgtgggactgt
gtgacaggaaggcggattgaaaactcttttggctgtataatggcagatgagatggggctg
ggaaagacactgcagtgcatcgctctcatgtggactttactgagacagagccctgatttc
aaacctgagattgacaaagccatcgtagtgtccccctccagtctcgtgcgaaattggtac
aacgaagtgggcaaatggctcggtggacgcgtgcagcctctcgctattgacggcggctcc
aaagacgagattgatcgtaaacttgagagtttcatcttccagcatggcattcgagtggca
actccaattctgataatatcttatgaaactttccgcctccatgctgaagtcctgcacaaa
ggcaaagttggactggttatttgtgatgagggtcacaggctgaagaactcggacaatcag
acataccaggcgctgaacgctatgaacgcccagaggagagtgctgatatctgggactccc
attcagaacgacttactggaatatttcagtttggtgcactttgtaaatgctggtattctt
ggcacagctcaagagtttaagaaacgctttgagatcccaatcctgaagggtcgcgacgct
gacgccagtgataaagacagggcagccggagagcagaaactccaggagctcatcagtatt
gttaacaggtgtttgattcgaagaacctcagatattctttccaagtatctgcctgtgaag
attgaacaagttgtctgctgcaaactgactcccctccagacagagctgtataagttattc
ctgaaacaggccaaacctgtagagagtgtgcagagcggcaagatcagcgtgtcttctctg
tcgtccatcacctcgcttaaaaagctctgcaatcatcctgccttgatttatgagaagtgt
ctggcaggagaagagggatttgatggagcaatggatctctttccccaaaattattccatt
aaagcagtagaaccacagctctcagggaagatgttagtactggactatgtcctggcaatg
accagaacaacaacgagtgacaaagtagttctggtctcaaactacacacagactttggat
ctttttgaaaagctgtgtcgaagccgaagatacctttatgtcagactggatgggacaatg
tccatcaagaagagagccaagattgtggagagattcaacaacccttctaatccagagttc
atcttcatgctgagcagtaaggctggcggctgtggccttaatctgattggagcaaaccgc
ttggtgatgttcgaccctgactggaatccagccaatgacgagcaggcgatggccagggtt
tggcgagatggacagaagaagacctgctacatctacagactgctatcgactggaacgata
gaggagaagatcctacagagacaggctcataagaaagccttgagtagctgtgtggtggat
gaggaacaggatgtggaaagacatttctctctcggggagctacgagaactcttctcactg
aatgaggagacacttagtgacacacatgacaggtttcgctgcagacgttgtataaacagt
cgccaggttcgtcctcctccagatgattcagactgcacttgtgatctgtccaactggcat
cactgttcggataaaagaggcctgagagacccggtgctgcaggcgtcctgggacgctgcc
gtctcgttcgtctttcaccagcgctcacatgaggaccagagaggagtcgtctga
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