Garra rufa (doctor fish): 141346690
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Entry
141346690 CDS
T11039
Symbol
vps16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
grf Garra rufa (doctor fish)
Pathway
grf04140
Autophagy - animal
grf04148
Efferocytosis
grf05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
141346690 (vps16)
04148 Efferocytosis
141346690 (vps16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
141346690 (vps16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
grf04131
]
141346690 (vps16)
Membrane trafficking [BR:
grf04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
141346690 (vps16)
Hops complex
141346690 (vps16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
141346690
NCBI-ProteinID:
XP_073707729
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Position
12:9904255..9922601
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AA seq
836 aa
AA seq
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MAFVTANWNPLGEAFYRKIELYEMGWNLKDGLRECLVAAAPYGGPIALLRGHNRRSPSAR
PQLEIYSSSGVPLASFPWKSGVVKQLGWTVSDDLLCIQEDGTVLVYDLLGGFKRHFSMGN
EVSQSQVLETKIFHSPYGTGVAILTGALRFTLATNIDDIKLRRLPEVPGLQGAPTCWAVL
NQDRQSKVLVASGSHLFVLDNTACTPVTPPGLSPQATSIVHMCVSFSYKYLALLTDSGHV
WMGTSNLKEKLSEVDTKVKTPPKQMAWCRRPKSQQPSAVVMWDGLLIVVGECKETIQYHL
DDDSVLVPELDGVRIISGTHHELLQEVPGACEEIFKIASMAPGALLLEAHKEYEKESQKA
DEYLREIKEQSLLTEAVKQCVEAAGHEHEPETQKTLLRAASFGKCFLSNFPPEQFVIMCR
DLRVLNAVRDYTVGIPLTHTQFKQMTVQVLIDRLVYRKLYPLAIEVCRYLKTPEYQGVSR
VLKHWACYKVQQKEESDEVIAKTVSFKLADAAGISYSEIATKAYESGRTELAIKLLEFEP
RSGEQVPLLLKMKKSPLALSKAIESGDTDLVYTVVMYLKNELNRGDFFMMLRNQPVALSL
YKQFCKHQEQDTLKDLFNQDDDHEELGNFYVKASYKEQRLEARIADLQSAVDEYYKAKNE
FSAKTTEDEMRLLRFQRKLEEEKGETLVGFSLHETMTTLLSVGLHKHAEQLYKDFRVPDK
RFWWLKLKALAEKEDWEELEKFAKSKKSPIGYLPFIEVCIKHHNKNEAKKYLSKVTPEQK
VKAHLAVGDMEGAAEAAIERRNESEISTVLSRCSTTADHHLLMERLNRAKCTVAKK
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgtcacagcgaactggaaccctctgggcgaagctttttacagaaagattgaa
ttgtatgagatgggctggaacctgaaagatggtctgagagagtgtctggttgctgcagct
ccatatgggggtcccatcgctctcctaaggggacataaccgacgctctcccagtgccaga
cctcagttagagatctactcttcctcaggagtgcctctggccagtttcccatggaaaagt
ggagtggtgaagcaattaggttggaccgtgtctgatgacctactgtgtattcaggaggat
ggtactgtgcttgtctacgatctcttgggtggcttcaagagacacttcagcatgggaaat
gaagtttctcagagccaggtgctggaaaccaagattttccattcgccgtatgggacaggt
gttgccatattgacgggtgccttgagattcactttggccacaaacattgatgacataaaa
ctgaggcggttacctgaggtcccaggtctgcagggggcgcccacatgctgggcagtcctg
aatcaggacaggcaaagtaaagtgctggttgcaagtggatctcatctgttcgtcttagac
aatacagcttgcacacctgtgactccaccaggtctctctccacaagcaacaagtatagtt
cacatgtgtgtctcattcagttataagtatctggcactcctcactgactctggccatgtg
tggatgggcacgtcaaacctaaaagagaaacttagtgaggtggacaccaaagtcaaaact
ccccctaaacagatggcctggtgtcgcaggcccaaaagtcagcagccatcggcagtggta
atgtgggatgggctgctcatagtggtgggagagtgcaaagaaacaattcagtaccacctg
gacgatgactcagttctggtgcccgaactggatggggttcggatcatcagtggaacacac
catgagcttctgcaagaggttccaggtgcgtgtgaggagatttttaaaattgcctcaatg
gctcctggggcattactcctggaggcacataaagaatatgagaaagagagtcagaaggca
gatgagtatctgagagagattaaagaacagagtctgctgaccgaggcagtaaagcagtgt
gtggaggccgccggacatgaacatgaaccagagacacagaaaacactcctgagggcagcc
tcatttgggaagtgctttttgagtaatttccccccagagcagtttgtcattatgtgcaga
gacctgcgggtgttgaatgcagtccgagactacaccgttggcattccacttacccacact
cagttcaaacagatgaccgtacaggtgctcatcgacagactggtgtatcgtaaactgtat
ccactggctatcgaggtttgccgctatttaaagactccagaatatcagggagtgagccga
gtactcaaacactgggcctgctacaaggtccagcagaaagaggaatcagatgaagtcata
gctaaaactgtaagctttaagcttgctgatgctgctggaatctcctactctgaaatcgcc
actaaagcatatgagagtggacgcacagagctcgccattaagttgttggagtttgagcct
cgttctggtgagcaggtcccactgctgttaaaaatgaagaaaagccctctggctttaagc
aaagccattgagagtggagacacagacctcgtgtacacagtggtcatgtacctgaagaat
gagctgaacagaggagacttcttcatgatgctgaggaaccaacctgtggctctgagcctc
tacaaacagttctgtaagcatcaggagcaggatacattgaaagatcttttcaatcaagat
gatgatcatgaagaacttggcaatttttacgtaaaggccagttataaagagcagaggctg
gaagctcggattgctgatttacaaagtgctgtggatgagtactacaaagccaagaatgaa
ttttctgccaagacaacagaagatgaaatgcgtctgctacggtttcagaggaagctagag
gaagagaagggagagacacttgtgggattctctcttcatgagactatgaccacgctgctt
tctgtaggactgcacaaacacgctgaacaactttacaaagacttcagagtgcctgataag
aggttctggtggctgaagttgaaggctctggctgagaaggaggactgggaagagctggag
aaatttgccaaaagcaaaaagtctcctattggatatctgccattcatcgaggtgtgcatt
aaacaccataacaaaaatgaagccaagaaatatttgtctaaagtcacaccagagcagaag
gtcaaagctcaccttgcagtgggggatatggaaggtgccgcagaggctgctatcgagagg
cgtaatgaatcagagatcagtactgttctgtcacgctgttcaaccaccgctgatcatcat
cttctgatggaacgcctcaaccgtgctaaatgcactgttgccaaaaagtga
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