Garra rufa (doctor fish): 141346831
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Entry
141346831 CDS
T11039
Symbol
trim25
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25 isoform X1
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
141346831 (trim25)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
grf04121
]
141346831 (trim25)
Enzymes [BR:
grf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
141346831 (trim25)
Ubiquitin system [BR:
grf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
141346831 (trim25)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
PRY
zf-C3HC4_4
zf-RING_UBOX
zf-RING_2
zf-C3HC4
zf-B_box
zf-C3HC4_2
ANCHR-like_BBOX
zf-RING_5
zf-C3HC4_3
RING_XB3-XBAT31
Lipoprotein_6
Motif
Other DBs
NCBI-GeneID:
141346831
NCBI-ProteinID:
XP_073707891
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All DBs
Position
12:21433538..21451175
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AA seq
661 aa
AA seq
DB search
MAENMSLLGLEDELTCSICLCLFENPVSLICGHSFCANCLEATWNDRVSSLSCPQCRMVF
PSKPELKKNTVLSAVLDAYRIKAGVPEPVKEHFEVKKKDPDAIKCDNCMEAKAVKTCLTC
MASYCEDHVRPHRENAIFRAHQLSDPLPDLMERLCSSHGKLMEFYCNQHQSCICSTCLQD
MHKGCEFITADERRFKLKTDLTDKLNILDVKTDKNQQVITQMKEQQSKLKDLATTRKRIL
EAEYRQIREMIDRDEKEAMLAIDKEQEKGQSKLVSLMKKFNENVEKMNRTKHEINSLLDK
SQSLAFLKASVDLPSVVNFEPYNPRMNVESKEVIGYHSSAVALKEWITKLMEQPTENRIF
RLKPGLGIQFGGMPSEIPAFLPNPREMSRMRSPSPGRGSKAKASGAKQKSSNKSANKVEK
DNKERKDQRPNQPRNPSKGPNPVFSKSMENLLDITPRTVEIPDINLPASLPAGQNFVKRS
DLLKYGTILNFDVRTAHKRISLSENNTKATVSDDPAHYPDIPLRFSVCSQVLCTKGFSQG
RHYWEIKMSSNNFCGLGLAYGRIDRKGPSSRLGRNADSWCVEWFNVKLSAWHNSIETVVQ
NPSPSRVGVLLDCDEGSATFYTVQDRAYPFHTFVFPFTEAVYPAFWIFSNGSSVSLCKLS
N
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaaatatgtctctactgggtctcgaggacgagttgacatgcagcatctgttta
tgtctattcgagaacccggtgagtttaatctgtggacacagtttctgcgccaactgtctc
gaagcgacatggaacgacagggtatcatctctatcctgccctcagtgccgaatggtgttc
ccgagtaaacctgaactaaagaagaacaccgtcctcagcgcggtgcttgatgcctataga
ataaaagctggtgtccctgaacccgtcaaggaacattttgaggtgaaaaagaaagatcca
gatgcgatcaaatgtgacaactgtatggaggccaaagcggtcaaaacttgtctgacatgt
atggcgtcttattgcgaagatcatgtcaggcctcaccgagagaatgccatttttcgggcg
catcaactttctgatccgctgccagatctgatggagcgtctctgttcaagccatggcaaa
ctgatggagttctactgcaatcagcaccagagttgcatttgcagtacttgtcttcaggac
atgcacaaaggctgtgagtttatcaccgcggatgagcgacgcttcaaactaaagactgac
ttgactgacaagctcaacatccttgatgtcaaaactgacaaaaatcagcaagttatcaca
cagatgaaggagcaacaaagcaaattaaaggacctagctacaacccgtaaacggattctt
gaggcagaatacaggcagatcagagaaatgatcgaccgagatgagaaagaagccatgctt
gctattgataaggaacaggagaaaggtcagagcaaactggtctccttgatgaagaaattt
aatgagaacgtcgagaagatgaacaggaccaaacatgagatcaacagtctgctggacaag
tcgcagtccctagcattcttaaaggcctctgtggatttgccctcggtggtaaattttgag
ccctataaccctcgcatgaatgtggaaagtaaagaggtgataggttatcattcctctgca
gttgcactgaaggagtggatcaccaaattaatggagcagccaacagaaaacagaatcttt
cgacttaaaccaggtctaggaatccaattcggtggaatgccaagtgagattcctgccttc
ctgccaaatccaagagaaatgtcacgcatgagatctcccagtccaggccgtggttccaaa
gccaaggcttcaggagctaaacagaaaagttccaacaagagtgctaataaagttgagaag
gataacaaagagcgtaaagaccagagaccaaaccagcctaggaatccctctaaaggacca
aatcctgttttctccaaaagcatggaaaacttgcttgacatcacacctagaactgtagaa
atacctgatataaatttacctgctagtttaccagctgggcagaactttgttaagagaagt
gaccttcttaaatatggcactatcctcaattttgatgtcagaacagctcacaagcggatc
tccctgtctgaaaacaacaccaaagcaacagtctcggatgacccagctcattatccagat
attccccttcgcttttctgtttgttcccaagtgctctgcacaaagggtttctctcagggc
cgtcattattgggagatcaaaatgagcagtaacaatttctgcggattgggacttgcctat
ggaagaatcgaccgcaagggtccctctagccgtctggggcgtaatgcagattcctggtgt
gtggagtggtttaacgtgaagctttctgcatggcacaacagcatcgagacggtggtgcag
aatcccagcccaagccgtgtgggtgtcctgctggactgtgatgagggaagtgcaacattt
tatactgtgcaggaccgggcatacccattccacacatttgtctttcctttcactgaggct
gtgtacccagctttctggatcttctcaaatggttcttctgtgtctttgtgcaagctcagc
aactga
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