Garra rufa (doctor fish): 141346889
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Entry
141346889 CDS
T11039
Symbol
chd1l
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1-like
KO
K20092
chromodomain-helicase-DNA-binding protein 1-like [EC:5.6.2.-]
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
grf03036
]
141346889 (chd1l)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
141346889 (chd1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
DEAD
LIG3_BRCT
SWI2_SNF2
AAA_22
Motif
Other DBs
NCBI-GeneID:
141346889
NCBI-ProteinID:
XP_073707948
LinkDB
All DBs
Position
12:complement(48656987..48676294)
Genome browser
AA seq
1031 aa
AA seq
DB search
MSTFLRAVKNNIPEKDKSELTESDLKKWGLEAIHLRSYQVDGVRWLSQCMKNQQGCILGD
EMGLGKTCQTISLLAYARGCLKMSGPFLVLCPLSVLENWRQELERFCPSLSVICYTGDKE
KRAELQIEIKNDRHFHVLLTTYEMCLKDASYLKSWTWKILVVDEAHRLKNQESLLHRTLK
EFTVGFRVLLTGTPIQNNLQEVYSLLTFIQPSLFLPEAVEDFVSAYADVQTEPALADELH
RVLQPFLLRRVKAEVAAELPKKTELVVFHGLSALQKRYYKAILMRDLDAFRTDQNSKTRL
LNILMQLRKCVDHPYLFDGVEPEPFEMGEHLVEASGKLSLLDTMLAYLQEGGHRVLLFSQ
MTRMLDILQDYLEYRGYSYERLDGSVRGEERNLAIKNFSTKDVFIFLLSTKAGGVGMNLT
AADTVIFVDSDFNPQNDLQAAARAHRIGQTRPVKVIRLLGRDTVEEIIYSRAVSKLRLTD
TVIEAGRFSLLDQAQSAASGLQLSEILKFGVDKLLATEESSIQDVDLRLILGQSRDGQWL
TDEENVKVDESDEEEDEDMEGQNHMYYFEGKDYSKDPSATDVKTFELLIEKQLTEQEDAG
KEGRALRNKAGLSLSGPLIDSGRKKRPLTESELEQRRQKRQEAAAKRAKLQEERKKQQEE
HNYKKKMAWWESCGYNSLCLPRVDSEGEDVEPDEDDVVSWSSTDSDHTAIRYVLGDVTHP
QADREDAIIVHCVDDSGHWGRGGLFTALELRSDEPKKHYELAGDMEDLELGSVLLFPIDD
KQSRLSGRDYLALIVAQQRDKANNLSGIRLTALDEGLKKIYREAKQKKASVHLPRIGHST
KGFNWYGTERLIRKHLATKGISTFIYYYKRATSHSSTVSSSTCTATPSTSHSASNPAASS
PSGSPHSSSPLGNTKDLSKSPKLSSTSHEGQGAPGLADFMRGVHVYFYNMAATEKKKLGR
YLIAYDGDEEDLMSPHVTHIVGEVESPVHAQELRDLLHQYPQTLLVKKKWLESCFANQRK
VSVSKYVIRLS
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgtccacatttcttcgagcagtcaaaaacaatataccagaaaaggataagtcggagctg
acagagagtgacctgaaaaaatggggactagaagcaattcatctgaggtcttatcaggtg
gatggagtgaggtggctgtcacagtgtatgaagaaccagcagggctgcatccttggtgat
gagatgggtctgggcaagacctgccagaccatttctttgctggcatatgctcgaggatgc
cttaaaatgagcggaccgttccttgtgctttgtcccttatctgttttggagaactggaga
caggagttggaacgcttctgtcccagtctgtctgtgatctgttacaccggtgataaagaa
aaaagagcagagctccagatagaaatcaagaatgaccgacacttccatgttcttctcacc
acctatgagatgtgccttaaggatgccagctacctgaaaagttggacatggaagatttta
gttgtcgatgaggctcaccggctgaagaaccaggaatcattgctgcaccgaaccctcaaa
gagtttacagtgggttttcgagtgctgttgacaggcacccccattcagaataacttgcaa
gaagtctattccctcctcaccttcatccagcccagtctgtttctgcctgaagccgttgag
gactttgttagtgcctacgcagacgtacagactgaacctgctcttgccgatgagcttcat
cgagtgctccagccctttttgttgcgaagggttaaagcagaggtggccgccgaactgcct
aagaagacagagctcgtggtttttcatgggctgtctgcccttcaaaagagatactataaa
gcgattctgatgagagaccttgatgcctttaggactgatcaaaacagtaaaacccgactt
ctgaacattttaatgcagctcaggaaatgtgtggaccatccatatttgtttgatggtgtg
gaaccagaaccgtttgagatgggggagcatttagtggaggccagtggaaagctttctctg
ctggacaccatgctggcgtatcttcaggaggggggccatcgtgttcttctgttttctcaa
atgaccaggatgctggatattctgcaagattatttagagtacagaggttacagttatgag
cgtctggatggttcagtccggggagaggagcgtaacctagctatcaaaaacttcagcacc
aaagatgtttttatattcctccttagcaccaaagctggaggggttggcatgaatctaaca
gcagcagatactgtgatatttgtggacagtgacttcaacccacagaatgacctacaagca
gcagccagagctcacaggattggccaaacaaggcctgttaaagtcatccggctcctcggt
agagatactgtagaagagatcatctattctcgtgctgtgtctaaactacgtctcacagac
acagtgattgaagcggggcgtttttctctgctggaccaggctcagtctgcagcttcaggc
cttcagttgagtgagatcctgaagtttggtgtagataaactgctggcaacagaggagagc
tccattcaagacgtggacctcagactaatcctggggcaatctcgagacgggcagtggcta
acggatgaagagaatgtcaaggttgatgagagcgatgaagaggaagatgaggacatggag
ggtcaaaaccacatgtactactttgagggtaaggactactctaaggaccccagtgctacg
gatgtaaagacttttgaactcttgattgagaagcagttaactgaacaagaggatgctggg
aaggaaggccgcgcgcttcgtaataaagctgggttgtccctgtctgggcccttaatcgac
tcagggaggaagaagagacctcttacagaatcagagttggaacagagacgtcagaagaga
caagaagcagctgcaaagagagcaaagctacaggaggaaaggaaaaagcaacaggaagaa
cacaattacaagaagaagatggcatggtgggaatcttgtggctacaactcactgtgcttg
ccacgagtcgacagtgagggtgaggatgtggagcctgatgaagatgatgtcgtcagctgg
agctccactgattcagatcacacagccattcgctatgtgctgggtgatgtaactcaccct
caggctgaccgagaggatgccatcattgtgcactgtgttgatgactctggacactggggg
cgaggaggattgttcactgcactggagctcagatcagatgagccgaagaagcattatgag
ttggctggtgacatggaagacttagaactggggagtgttctgctttttcctattgatgac
aaacagtcgagactcagtggaagagactatctggcactgatagttgctcagcagagggat
aaagccaacaatttgtcaggcattcggctcactgccttggatgagggcctcaagaagatc
tacagagaagccaaacaaaagaaggcaagtgtccatctgcctcggattggtcactccact
aaaggcttcaactggtatggtacagagagactcattcgcaagcacttggccaccaaaggc
atctctacatttatctactattataaacgagccacttcacactcatctacagtttcttcc
tcaacatgcacagctactccatcaacctcacactctgcctcaaacccagcagcatcctcg
ccatctgggtctccacactcctccagtcccctcggtaacactaaagacctttcaaagtca
ccaaaactctccagtacgtcacatgaaggtcagggtgcaccagggttagctgactttatg
agaggagttcatgtctacttctacaacatggctgctacagagaaaaagaagcttggccgc
taccttatcgcatatgacggtgatgaagaggatctcatgagcccacacgtcactcatatt
gtaggagaggtggaaagtcctgtccatgcacaggaactgcgagatctattgcatcagtat
cctcagaccctgcttgtaaagaaaaagtggctggagtcttgctttgctaaccaaaggaaa
gtcagtgtgtctaaatatgtaattaggttatcttga
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