Garra rufa (doctor fish): 141346962
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Entry
141346962 CDS
T11039
Symbol
shmt2
Name
(RefSeq) serine hydroxymethyltransferase, mitochondrial
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
grf Garra rufa (doctor fish)
Pathway
grf00260
Glycine, serine and threonine metabolism
grf00630
Glyoxylate and dicarboxylate metabolism
grf00670
One carbon pool by folate
grf01100
Metabolic pathways
grf01200
Carbon metabolism
grf01230
Biosynthesis of amino acids
grf01240
Biosynthesis of cofactors
grf04981
Folate transport and metabolism
Module
grf_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
141346962 (shmt2)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
141346962 (shmt2)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
141346962 (shmt2)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
141346962 (shmt2)
Enzymes [BR:
grf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
141346962 (shmt2)
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Gene cluster
GFIT
Motif
Pfam:
SHMT
Flavi_NS5
Motif
Other DBs
NCBI-GeneID:
141346962
NCBI-ProteinID:
XP_073708031
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Position
12:46703189..46748622
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AA seq
497 aa
AA seq
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MLTLTLRQLIRPVCRRVPASVRSQHSAAAFADDERSWTGQESLAQDDPEMWDLLQKEKDR
QCRGLELIASENFCSRAALEAQGSCLNNKYSEGYPGKRYYGGAEVVDQIELLCQKRALEA
FDLDPALWGVNVQPYSGSPANFAAYTAVLNPHDRIMGLDLPDGGHLTHGYMSDVKRISAT
SIYFESMPYKLNPKSGLIDYDQMELTARLFRPKLIIAGTSAYARLIDYSRVKKLCAELNA
YMLADMAHISGLVAGKAVPSPFQHADLVTTTTHKSLRGSRAGLIFYRKGVRSLDKKGKEV
MYDLEDKVNFSVFPSLQGGPHNHAIAGVAVALKQATTPMFREYITQVLKNSKAMADALLK
KDYTLVSGGTDNHLVLVDLRPQGMDGARAERVLELVSITANKNTCPGDKSALTPGGLRLG
TPALTSRQFKESDFQQVVDFIDQGIKIALDVKKKTKKLSDFKSFLLEDSETVSRIADLRR
RVEAFARPFPMPGFNDH
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgttgacactgacattgagacagctgatcaggccggtgtgtcggcgtgttcccgccagc
gtcagatcccagcattcggcggcggcgtttgctgatgacgaacgctcatggacgggacag
gagagtctggctcaggacgacccagagatgtgggatcttctgcagaaggagaaggacaga
caatgcagaggactggagctcatcgcctcagagaacttctgcagtcgtgcggctctcgag
gctcagggttcgtgtctcaacaacaagtactctgaaggatacccgggaaaaaggtattac
ggcggtgcggaggtggtggatcagatcgagctgttgtgtcagaagagggcgctggaggcg
tttgacctcgacccggcgctgtggggcgtcaatgttcagccctactccggatctccggct
aacttcgccgcttacacggccgtcctgaatccgcatgatcgcatcatgggtctggacctc
cccgacggcggacatctcactcacggctacatgtctgacgtcaagcggatctcggccacc
tccatctacttcgagtcgatgccctacaaactcaaccctaaatctggtctgatagactat
gatcagatggagttaaccgctcgactcttccgacccaaactcatcatcgccggcaccagc
gcttacgctcgcctcatcgactacagccgcgtcaagaagttgtgcgccgagctcaacgcg
tacatgctggcggacatggctcacatcagcggactggtggccgggaaagccgttccctcg
ccgttccaacacgccgacctcgtcacaacaaccacccacaaatcactgcgaggatccaga
gcggggcttatattctaccgtaagggcgtgcgctcgctggataagaagggcaaagaggtc
atgtatgatctggaggacaaggtcaacttctctgtgttcccttcacttcagggaggaccg
cacaaccacgccatcgccggcgtcgctgtggctctcaaacaggccacgacgcccatgttt
cgcgagtacatcactcaggttctgaagaactccaaggccatggcggacgcgctgctgaag
aaggactacacgctggtctccggaggaaccgataatcatctggttctggtggacctgaga
cctcaggggatggatggagcgcgtgcggagcgggttctggagctggtgtccatcacggcc
aacaagaacacctgtcctggagacaagagcgctctgacacccggcggactgagactcgga
acccctgctctcacgtcccgtcagttcaaggagtctgacttccagcaggtggtggatttc
atcgatcagggcatcaagatcgctctagacgtcaagaagaagaccaaaaaactgtcagat
ttcaagagtttcctgctggaggactcagagacggtgtcccgtatcgctgatctgcgtcgt
cgcgtggaggctttcgctcgtccgttcccaatgcctggattcaacgaccattaa
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