Garra rufa (doctor fish): 141347596
Help
Entry
141347596 CDS
T11039
Symbol
chd6
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
grf03036
]
141347596 (chd6)
Chromosome and associated proteins [BR:
grf03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
141347596 (chd6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HTH_CHD6-9
Chromo
BRK
ResIII
DEAD
HDA2-3
CHDCT2
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
141347596
NCBI-ProteinID:
XP_073708688
LinkDB
All DBs
Position
12:41183623..41220847
Genome browser
AA seq
2723 aa
AA seq
DB search
MSATHVLKHTPSAAASNASDQNAQTTFPIGHLGKEQLRIIGGPPNHCMAHPKHSGLREVG
SAASSHSLRPLSINSEEDDGGGGTRVKKKRRKKDKKEPVWHKEEESNAKPKRREQKEGKE
ILPRKSKAVKEQKEQKKRETKAQKEVKKVKRGQDVKVKTQAKNTATHPPSKRGRKPKEQG
AMPPEKKKKGKRKSDAVLEMVESDDTTSLSTLATGEESIDPMDNTKRRSGRQVKRRKYNE
DLDFKVVDDDGETIAVLGSGRIAAMSSSTLAWQAEEPPEDEANIIEKILAVRTANKETSP
DEPPEEMEEFYVKYRNFSYLHCKWATLEELEKDPRIHQKIKRFRNKQAQMKHIFTEPDED
LFNPDYIEVDRVLEIAITTDTETGEEVTHYLVKWCSLSYEESTWELQEDVDPVKIREFEE
LKQIPEIKHVERPLPEQWQKLEKSREYRNVNQLREYQLEGMNWLLFNWYNRKNCILADEM
GLGKTIQSITFLYEIFLMGLRGPFLIIAPLSTITNWEREFRTWTEMNVIVFHGSQISRQM
ILQYEMYHRDEQGNIVSGQFKFHGIITTFEMIMADCPELKKLNWRCVVIDEAHRLKNRNC
KLLEGLKLMNLEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETTFLEEFGDLKTEEQV
KKLQAILKPMMLRRLKDDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFAFLAKGANQ
HNMPNLINTMMELRKCCNHPYLITGAEEKILESFRKTYSSDAADFQLQAMIQAAGKLVLI
DKLLPKLLAGGHKVLVFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFSKV
DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLI
TRNSYEREMFDKASLKLGLDKAVLQDINRKGSLNGVQQLSKLEVEDLLRKGAYGALMDEE
DEGSKFCEEDIDQILQRRTQTITIQSEGKGSTFAKASFVSSGNRTDISLDDPNFWQKWAK
IAELEIDSKAEKESLVIDTPRVRKQTRHYNSFEDDELMEFSELDSDSEERPCRTRRLSDR
NRRYLRAECFRVEKNLLIFGWGRWKDILNHGRFKWHLTERDMEVLCRALLVYCVRHYKGD
DKIKSFIWDLITPTKDGHNQALQNHSGLSAPVPRGRKGKKLKNQLSPPELKNADWLPHCN
PEVVLQDDSYKKHLKQHCNKVLLRVRMLYYLKVEVLGEAANQSLEGIPASKLEVTLPDID
YIEIPTIWWDAEWSQFRALARLERKTDESLERYFHSFVSMCRTACRLPPRKDEGNVDPSL
FVEPITEERAARTLYRIELLRKVREQVLRHPLLGARLQLCRPSLYLPVWWECGKHDRDLL
IGVAKHGLSRTDFYILNDPQLSFLEAHRNYVHKENHRYPVPGLPHHHCCLYDANLGHCQS
PQPPEYHPTASHHTPTQLVHTHGHHQPTEVVASESGSSLGIGTGNREGFLDCPPLDDSLE
LGSLQHEGLTSDTLHGKSGKEAFNGFPFNSATGGQNMLNSYGVQGELNGSQGDMVDSIAG
KLRSDVLVGEQGSSEETGLMAPSVELDELQTPWESSDHAETSDMFNETDPILGSQTLEPS
FLDAPQPEDGREGDETLTDCLSMPSSDSQSNPVEPLAPSFMLFKDLNVGEASVDQTDLSA
SLPEYVPPPPLGLPDVSLDQTDPISEEQEDKLSDSNITHGVPSPDEGAESVGFHFEKEDL
SPDSLKTKDTQDEIDKMPSVESPRENCLEETQKGDCKVPFDDSNGDPCEVALEETYEKPL
TEPEKVPLEESYDLTCDETLQEPCEGFQQDTAEQQLEEEPCKEPSEPMEECNLTNTTLST
DYPIPSSLQSSPTTLPDTSASPGLDAVPKQEFLVDPVVSEMKPEPDSTTQTPHLEQTEVL
EVKDKIKDEGAKTPAFLGDVDGPRFALPVCEMADSVHEIREPTIAQLLQEKALFSFSEWP
KDRVVINRIDSICHTILKGKWPSSSQQFESPTSLANTCVPSSAHQRAGFLSTRMPISQSL
NFNLPHTVSHLPKVGRLVAPAFLPELKRPRRGFEFEAEVLAKPSHLGEKIQVGVPHRANA
LLLNGWQDAAIDLSKPTELTVGGDSGPIGQMSHTVQSAPHKITGIGSIQGSLGLDMAGIL
QAGLIHPVTGQIVNGGLRRDDSMLRRRRGRRKNVETPDLSFMKGRSVNLSEQQSGSESIS
HPVVSSTSSQSEGPPATPTTLPSHPPAPSPAPPPATETLNVSIDRETANKGLMEWLRQNP
NYNMELSAYPSQNASMLHSFLERPKQRRHRCKDPTKLDVNSLTGEERVPVVHRNTGRRLG
GAMAPAIKELSRWLDANSEYSVAPDWADVVKHSGFLPEGKFTRILSAPVSRDPGPRRRGR
RPRNEMPKVPELPAGMGPLFMNGGLISSMDLVSLPNLRNVPGIPLTGIMGFPHGFATTVP
SGEDAKNGLSMLPMMLHSMAAVQPPMYSAHMSGIMNQPLSTATSTATASSTTVSVTSTNS
ATVTSTSSPADSSDSAPQRENASSPMSTENGNKEDAKQGGEEKKVSASVSTAAATSSSSS
SSITSTGSHLTFNPFLIPGMSHSLLYPHMFLPPGSIMALPAMPAADSTGSPKRKRKKVRE
EGPEEGSGSVGVHIDGVDSKEVKDEQTPEQKSQEGGMEEGRPDVDLPQVKDPSDLINPFE
DKSTEEKDKNALGDAQGSCDGED
NT seq
8172 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccacccatgtactaaagcacactccatccgctgctgcctcgaatgcctctgac
caaaacgcacaaactacatttcccattggccacttgggcaaagaacagttacggatcatc
ggagggccgcccaatcactgcatggctcacccaaagcactctgggttgcgggaggtgggg
tctgcggccagcagtcacagtctccgccctttatcaatcaacagcgaggaggacgatgga
gggggcgggaccagggtgaagaagaaacgaaggaaaaaagacaagaaagagccagtgtgg
cacaaagaggaagagagcaatgctaaaccaaagagaagggagcaaaaggaagggaaggag
attcttccgagaaagtcaaaggcggtcaaggaacaaaaggagcaaaagaagagggagacg
aaagcccaaaaagaggtcaaaaaagtcaagagaggtcaagatgtgaaagtgaaaacacag
gccaagaacactgcaacacatccaccctctaaaagagggaggaagccaaaagagcagggt
gccatgcctccggagaagaagaagaagggaaagaggaaaagtgatgctgtacttgagatg
gtggagagcgatgacacaacctctctcagcacgctcgccaccggcgaggaaagcatcgac
cctatggataacactaagaggcgatcagggcgtcaagtgaagcggcggaagtataacgaa
gatcttgatttcaaggtcgtggatgacgacggggaaaccatcgccgtgttgggctcgggc
cggattgccgccatgtcttcctctaccctcgcctggcaggctgaggaaccccctgaagat
gaggctaatatcattgagaaaatactcgcagtgcgaacggccaacaaagagacatcccct
gacgaaccaccagaagagatggaggagttttacgtcaaatacagaaatttctcctatctg
cactgtaaatgggcgaccttggaggaactagagaaggacccacgcattcaccaaaaaatc
aagcgcttcagaaacaagcaggcgcaaatgaagcacattttcacagagccggatgaagac
ctgttcaatccagattacattgaggttgatcgggttttagagattgctatcaccacagat
acagaaacaggagaggaagttacacactaccttgtgaaatggtgctctctgtcatatgag
gagagtacttgggagcttcaggaagatgttgaccctgtgaaaatcagagagtttgaagag
ctcaagcaaatcccagaaatcaagcatgtggaaaggcctctgcccgaacagtggcaaaaa
ctggagaagtccagagaatacaggaatgtgaaccagctgcgagaatatcagttagaggga
atgaactggctccttttcaactggtacaacaggaaaaactgtattctggctgatgagatg
gggctgggaaagaccatccagtcaatcactttcctctatgagattttcctcatgggtcta
agaggacctttcctcattatcgctccgctgtccaccatcaccaactgggagagagagttc
cgcacatggactgaaatgaacgtcatcgtgtttcacggcagccagatcagtcggcagatg
atcctgcaatatgagatgtaccatcgagatgaacagggaaacattgtgtccggtcagttt
aagtttcatggcatcatcactacatttgaaatgatcatggctgactgtccagagctgaag
aagcttaactggcgctgtgtggtgatcgacgaggcccatcggctaaaaaaccgcaactgt
aaactgctggagggactcaaactcatgaacctggaacataaagttcttctcacaggaacc
cctttgcagaactcggttgaggaactcttcagtctgcttaactttctcgaaccctcacag
ttcccttctgagacaactttcctagaggagtttggagacctgaagacggaagagcaggta
aagaaactgcaagccattctgaagcccatgatgttgaggagactgaaggatgacgtggag
aagaacctggcccctaaagaggagacaatcatcgaggtggagctcactaatattcagaaa
aaatactaccgcgccattctggagaaaaactttgccttccttgccaagggagcaaaccag
cacaacatgcccaacctcatcaacacaatgatggagcttcgcaagtgctgcaatcaccca
tacctcattacaggtgctgaagaaaagatccttgagagcttcagaaaaacctacagttct
gatgctgcagattttcagctgcaggcaatgatccaggctgctggtaaactagtgcttatt
gacaagttgctacccaaactgctggccggaggacataaagtgctggtgttttcccagatg
gtccggtgcctggatatactggaggactacctcattcagaggaggtatacatacgagcgt
attgatgggagagttcgagggaatctacgacaggctgccatcgatcgcttcagtaaggtg
gactctgaccgcttcgtgttcctcctctgtacacgagcaggaggtctgggcatcaacctc
actgccgccgatacttgcatcatattcgactcagactggaacccgcagaacgacttgcag
gctcaagcgcgctgccaccggatcggtcaaagcaaagcggtgaaagtatatcgccttatc
acacgaaactcgtacgagagggagatgtttgacaaggccagtttgaaactgggactggac
aaggctgttctgcaggacattaaccgcaaaggcagtctcaacggggttcagcagctctct
aagttggaggtggaagatcttctcaggaagggagcgtatggggcgcttatggacgaggaa
gatgagggctcaaaattttgtgaggaggatattgatcagatcttgcagagacgcacacag
accatcacaatccagtctgaggggaagggatcaacttttgccaaggctagctttgtgtct
tcagggaaccgtacagacatctctctggacgatccaaacttctggcagaagtgggccaaa
attgctgaactggaaattgactccaaggcagaaaaggagagtctggtgatcgacacccct
cgcgtacggaagcagacgcgtcactataactcctttgaggacgatgaactgatggagttc
tctgaactggacagcgactcagaggaacgaccctgtcgcacaagacgtctcagcgatcgc
aacagacgctacctccgagcggagtgcttcagagtagagaaaaaccttctcattttcggg
tggggtcgctggaaggatattctcaatcatgggcgttttaaatggcacctgacagaaaga
gacatggaggtgctgtgcagggctcttctggtctactgtgttcgccattataaaggagat
gacaaaattaagagcttcatctgggatctgatcacacccactaaagacggacacaatcaa
gcactacaaaaccactcaggtctgtctgctcctgttccacggggtcgtaaaggcaagaag
ctgaagaatcagttgagtccacctgagctgaagaatgcagactggctaccccactgtaac
ccagaggttgtgcttcaggatgacagctacaagaaacacctcaaacaacactgcaacaag
gtgctactgagggtgcggatgctgtactatctaaaggtcgaagtgctgggggaggctgct
aaccaatctcttgaagggataccagccagtaaactggaggtaaccctccctgatatcgac
tatattgagattcctactatatggtgggatgctgaatggagccagttccgtgcccttgct
cgattggagaggaagacggatgaaagcttagaaagatatttccacagctttgtttcaatg
tgtcgaaccgcctgtagactgccgcccagaaaagatgaaggtaacgtggatccttcactg
tttgtggagcctattacagaagagcgagctgcccgaacattgtaccgaattgagcttttg
agaaaggtccgtgagcaagtattgcgccacccacttttgggagcaagactgcagctttgt
cgccctagtctgtacttgcccgtctggtgggagtgtggcaaacatgaccgtgatcttctc
attggggtcgctaagcatggtttgagtcgaactgatttttatatcctcaatgaccctcaa
ttatccttcctggaggcacaccggaactatgttcataaagaaaaccacagatatccagtc
ccaggcttgccccaccaccattgctgcttgtatgatgccaaccttgggcattgtcagtcc
ccacaacctccagagtatcaccccacagcttcacaccacacaccaacacagcttgtccat
actcatgggcatcaccagcccacagaagtggtggcatcagagtctggaagttccctaggg
ataggtacaggaaacagggaaggatttttggattgccctccattggatgactctctggag
ttggggtctttacaacatgaagggttgacatcagatacactacatggaaaatctggtaaa
gaggcctttaatggattcccgttcaattctgcaaccggtgggcagaatatgctaaattca
tacggtgtccaaggggagctaaatgggtctcaaggagacatggtggactccatagctggg
aaacttcgcagtgatgttctggtaggagaacaagggtcatcagaggagactggcttaatg
gctccttctgtggaacttgatgaacttcaaactccttgggaaagctcagatcatgctgaa
acctctgacatgttcaatgagactgatcccatcttgggatctcaaactttggagcccagc
tttctcgatgctcctcaaccagaagatggacgggagggtgatgaaacactcactgattgt
ttgagcatgcctagttcagactctcaaagcaaccctgttgaacctctggcaccgagcttc
atgttgttcaaagaccttaatgttggagaggcttctgtggatcagacggatctatcagcc
agtcttccagaatatgttccaccaccacctcttggactcccggatgtgagtcttgaccag
acagatcccattagtgaggagcaagaggacaagcttagtgattccaacatcacacatggc
gttcccagtccagacgaaggagctgaaagcgtaggatttcattttgagaaagaagacctt
tctccagacagtctgaagacaaaggatactcaagatgagatcgacaagatgccttcagta
gagtctccaagggaaaattgtctcgaggaaacccagaaaggggactgcaaggtgccattt
gacgattccaatggagatccttgtgaagtggccttggaagaaacttacgaaaagcctcta
acagagccggaaaaagtgcctttagaggaatcttatgatttgacttgtgatgagaccctg
caggagccttgcgaagggtttcagcaagacacagcggaacagcaattggaggaagaaccc
tgcaaggaaccgtcagagccaatggaagagtgcaatctaactaacactaccctctcaaca
gattaccctatcccttcttcactccaatcatctccaactaccttacctgacacctctgca
tctccgggccttgatgcagtcccaaaacaagagtttctcgtggacccagtggtgtcagaa
atgaagcctgagccagatagcactacacagacccctcaccttgagcagactgaggttttg
gaagtaaaggacaagataaaagatgaaggtgcaaagacaccagcatttttgggagatgtt
gatggaccacgctttgcattgcccgtgtgtgagatggcagacagtgtccatgaaataagg
gagccaactattgctcagcttctacaagagaaagcactattctccttctcagagtggcct
aaggacagagtggtcatcaaccgtattgacagtatctgccacactatcttaaaggggaag
tggccttcctctagtcaacagtttgagtctcccacctcattggctaacacctgcgtgccc
agcagtgcccaccagagggcaggatttctgtctaccagaatgcctatatctcagagcctt
aactttaacctcccacacacagtatcccatttaccaaaggtaggtcgattagtggcccca
gcatttctccccgagctcaaacgtcctagacgtgggtttgaattcgaggcagaagtcctt
gccaaaccaagccatcttggagaaaagatccaggttggcgtgcctcatcgtgctaacgct
cttcttcttaatggctggcaggacgccgctattgacctctccaaaccaacagagctaaca
gttggtggagacagtgggccaatcggtcagatgagccacactgtccagtcagcgcctcat
aaaataactgggataggctccatacaaggctcactgggattggatatggctgggattttg
caggctggcctgattcatcctgtcacggggcaaattgtcaacggcggtcttcgacgtgat
gattcaatgttgagacggaggagaggacgaagaaaaaatgtggagactcctgatctcagc
tttatgaagggacgaagcgtgaacttgtctgaacaacagagcggctcagagagtatcagc
caccctgttgtgtcctccacatcctcccagtccgaaggccctccagccaccccaactaca
cttccttctcaccctccagcaccctctccagctcctcctccagccacagagaccctgaat
gtgagcatagacagggaaacggccaataaaggcctaatggaatggctccgacaaaacccc
aactataacatggagctttctgcttatccgtctcagaatgcaagcatgttgcacagtttc
ttggagcgtccgaagcagagaaggcatcgctgcaaagacccaaccaagcttgatgtcaac
tctttaactggggaggagagagtcccagtagtgcacagaaacacaggccgcaggcttggt
ggcgctatggctccagccattaaagagctctcccgatggctcgatgcaaactcagaatac
tctgtggctcctgattgggcagatgtggtaaagcactcgggcttcctaccagagggcaaa
ttcacacgcatcctctctgcacccgtgagtcgggatcccggcccacgcaggagaggcagg
cgacctcgcaatgagatgcccaaagtccccgagctccctgctggcatgggtccgctcttc
atgaacggcgggctcattagcagcatggatctggttagcttacccaatctccgcaacgtc
cccggcatcccgcttaccggtatcatgggctttcctcacggtttcgccaccaccgtacca
tcaggagaagatgccaagaacggcctcagcatgctgcccatgatgctccacagcatggcg
gctgtgcagccgcccatgtacagtgctcacatgagtggaataatgaatcaaccgctgtcc
actgcgacgtcaactgcaaccgcatcctccactacagtgagcgtgacttctacgaactcc
gcaacagtaacctcaacctccagcccggcggatagttcagattctgcgcctcagcgtgaa
aacgcaagctctccgatgagcacggagaacgggaataaggaggacgcaaagcaaggcggg
gaagagaagaaagtgtccgcttcggtgtctacagctgcggccactagcagcagcagtagt
agtagcatcacaagcaccggcagccatttgacctttaacccctttctaatcccgggaatg
tcgcatagtctgttgtatccgcatatgttcttgccaccaggcagtataatggctctacct
gctatgcctgcagcagacagcacgggcagccccaagaggaagaggaagaaggttagggag
gaaggaccagaggagggaagcggcagtgttggtgtgcatatagatggtgtggattcgaaa
gaggttaaagacgaacagacacccgaacaaaagagccaagagggcgggatggaagaaggc
aggcctgatgtagatttacctcaggtcaaagatccttctgacctcataaatcctttcgag
gataaaagtactgaggaaaaggacaaaaacgcgttaggagatgctcaaggctcgtgtgac
ggtgaagactag
DBGET
integrated database retrieval system
