Garra rufa (doctor fish): 141347653
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Entry
141347653 CDS
T11039
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
grf Garra rufa (doctor fish)
Pathway
grf03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
141347653
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
grf01009
]
141347653
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
grf04515
]
141347653
Protein phosphatases and associated proteins [BR:
grf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
141347653
Cell adhesion molecules [BR:
grf04515
]
Cadherins
Protocadherins
141347653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
MAP17
Cadherin_4
V_ATPase_I
UTP20_C
DUF6377
Motif
Other DBs
NCBI-GeneID:
141347653
NCBI-ProteinID:
XP_073708736
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Position
12:complement(6943654..7244262)
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AA seq
1238 aa
AA seq
DB search
MDLRDFFLLATLVACFWLDPTIAQELIYPIREELQENVLIGNIPKDLNISHMNSATGATS
NLVYRLVSKAGDTPLLRVMSNTGEIFTTSNRIDREKLCPGPSFEDSECSFEIEVVILPND
YFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFAIPSATDPDTGPNSVHKYEL
LNGQSAFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKVKVEDGGNPQKSSTAILQVT
VTDVNDNRPVFKESQIEVHIPENSPVGTSVVQLQATDADVGANAEIKYMFGAQVSPATRR
LFAMNSTTGLITVQRPLDREETAIHKLTVLASDGSSSPARATITINVTDVNDNAPNIDLR
YIISPTNGTVMLSEKDPINTKIALITVSDKDTDVNGKVICFIEKDVPFHLKAVYDNQYLL
ETSALLDYEGTKEYIFKIVASDSGKPSLNQTALVRVRLEDENDNPPIFTQPVIELAVMEN
NQRDMFLTTISATDEDSGRNAEIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFLFT
VTARDNGTRALQSQAAVIVTILDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDADA
GENAVVRLSILNDNENFILDPDSGVIKSNVSFDREQQSSYTFDVRAVDNGSPPCSSAAKV
TINVIDVNDNQPVVIYPPSNTSFKLVPLSAIPGSVVAEVFAVDGDTGMNAELKYTIVSGN
GRSLFRIDPVTGNITLEEKPTVADIGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTVGNS
SYIHDLIRRTMETPLDRNIGESSETYQSVDNLKTIIAIVTGAMVVIVVIFITVLVRCRHA
SQFKAAQRKKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEENKPDDSAHEPIN
GTISLPAELEEPGIGRFDWNATPTTTFKPSSPDLARHYKSASPQSAFHLKADTPVSVKKH
HVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKSKGAPLHTRQGTLTRART
ELNPDYLDLRSRAELNPEYWTPCTPLSQRRVTFHLPDGSQESCSDSGLGDHEPVGSGPLL
SHPLPLVQAQDDFYEQASPDKRTEADGNSDPNSDGPLGPRGLVEATEMCTQECLVLGHSD
NCWMPPSLSSYPSPKSPVSSFNNQKEWAKERLLNGHTLTRSWKGERGSQEQFGDRKTFGS
SEGHFGSGGGGHMADIPLASLKSYQPASGPDSPKEQQL
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atggatttaagggattttttcttgttggcaacattagttgcttgtttctggttagatccc
actatagcccaagagctcatttaccctattcgagaagagctacaggagaatgttcttatt
ggaaacataccaaaggacttgaacatctcccatatgaactctgccactggggctaccagt
aatctggtttaccgacttgtgtcgaaagcaggtgacaccccgctacttagagtgatgagc
aatacaggggaaatctttaccacctccaaccgtatcgacagggagaaactctgtcctggc
ccctcttttgaagacagcgagtgctcctttgaaattgaggtggtcattttgcccaatgac
tatttcagattaatcaaaattaaaatcatcgtcaaagacaccaacgacaatgcccccatg
ttcccctcgcctgtgatcaacatttcaattccggaaaacacactcatcaacagccgcttt
gctattccctctgccaccgatccagataccggacccaacagtgtacacaaatacgagctg
ttgaatgggcagagtgcctttggtttggatattgtggagacaccagagggcgagaaatgg
cctcagcttatcgttcagcagaatttagacagagaacagaaagatacttatgtgatgaaa
gtcaaagtggaggatggcgggaacccacaaaaatccagcactgccattctacaggtgacc
gtcactgatgttaacgataaccggcctgtcttcaaagaaagccaaattgaggtccacatc
ccagaaaattctcccgtcggcacatctgtagttcagctgcaagccactgatgcagacgtg
ggtgccaatgctgaaataaaatacatgtttggggcccaggtgtctccggcgacacggaga
ctttttgctatgaactccactactggactcataacagttcaaaggccacttgatagagag
gagactgccattcataaactcacagtactagccagcgatggaagctcgagtccggcaaga
gccaccatcactatcaatgtaacagatgtgaacgacaacgctccgaacatcgacctgaga
tacatcatcagtccgactaatggtactgtaatgctttctgaaaaagatccaattaacacc
aagatagcccttattactgtatccgacaaagacactgatgtcaatggcaaggtgatttgc
ttcattgaaaaagatgttccatttcacctcaaagcagtttatgataaccaatatttgtta
gaaacatccgcactgcttgattacgaaggaaccaaggagtacatcttcaagattgttgct
tctgactctggaaaacctagtctgaaccagaccgccctggtgagagtacggttggaggat
gagaatgacaatccacccatcttcacccagcccgtcattgagctggcggtcatggagaac
aaccaacgtgacatgttcctgacaaccatcagcgccacagacgaggacagcggacggaat
gcagagatcgtctaccagctgggacccaacgcatcgttctttgatcttgaccgcaaaacg
ggagtgctaaccgcatccagggtgtttgatagggaggaacaagaacggttcctttttacg
gtcactgctcgggacaatggcaccagggctctgcagagtcaagctgcagtcatagtgacc
atactggacgagaacgacaacagccctaaatttacacacaaccactttcagttcttcgtg
tcagagaatctgcctaaatatagtacagttggagtaatcacagtcacagatgcagatgct
ggtgagaacgctgtggtgagactctcaatccttaacgataatgagaacttcatccttgac
ccagattctggagtcataaagtccaatgtttccttcgaccgagagcagcaaagctcctac
acctttgacgtcagagctgtggacaatggaagccctccatgttcgtcagccgccaaggtg
accatcaatgtcattgatgtcaacgataaccaacccgtcgtcatctacccaccatcaaac
acctctttcaaactagtgccgctgtctgcgattccaggatcggttgtggccgaggtgttt
gcagtagatggcgatacgggtatgaatgcagaactcaaatacactattgtgagtggtaac
ggaagaagtcttttcagaattgaccctgtaacgggaaacatcacgttagaggaaaaaccc
acagttgcagacattggcctccacaggctagtggtcaacatcagtgacctcggctatcca
aagtccctgcacactcttgttcttgtttttctgtatgttaacgacacggttggaaattcc
tcgtacatacatgacctcatccgacggacaatggaaacgccactggataggaacatcggc
gagagcagtgagacttatcagagcgtcgacaacctaaaaaccatcatcgccattgtgaca
ggcgctatggtagtgattgtggtcatcttcataacagttctggtgcgctgccgacatgcc
tcgcagttcaaggcggctcagagaaagaagcagggtgccgagtggatgtcccccaaccag
gagaacaagcagaacaagaagaagaagcgcaaaaagaggaagtcaccaaagagttccctc
ttgaactttgtcaccatcgaggagaacaaacctgacgactctgcccacgaacccataaac
ggaaccatcagtctcccggctgagctcgaggagcccgggattggacgctttgattggaat
gccacccctactaccaccttcaaacccagcagcccagacttggccaggcactacaagtcc
gcttcaccccagtcggccttccacctcaaagctgacactccggtgtctgtgaaaaagcat
cacgtgatacaggagctgccactggacaatacctttgttggagggtgtgacacgctttcc
aaacgttcctccaccagctctgatcacttcagtgcctcagaatgcagttcacaaggaggc
ttcaagtcaaagggggcacctttgcacaccagacagggaacgcttacccgcgcccgcacc
gaactgaaccccgattatctggacctccgctcccgagccgagctgaacccagagtactgg
acgccctgcactcctctatcgcagcggcgcgtcacgtttcacctgccggacgggtctcag
gaaagctgcagtgacagtgggctgggggaccatgagcccgtgggcagtgggccgctcctc
tcacaccctcttcctctggtgcaggcacaggacgacttctacgaacaggcgtctccggac
aagaggaccgaagcggacggcaactcggaccccaactctgatggacctctaggaccgaga
ggcttagtggaggccacagagatgtgcacccaagagtgtctggtattgggccactccgac
aactgttggatgcctcccagcctgagctcgtacccttcgcccaagtcccctgtttcctct
ttcaacaaccaaaaggagtgggctaaagagagactgctgaacggccacaccctgacccgc
agctggaaaggcgagcgcggaagccaggagcagtttggggacaggaagaccttcgggagc
tcggagggacattttggcagcggtggcggcggtcacatggccgacatcccattggccagc
ctgaaatcttaccagcccgcctctggccctgacagtcccaaagaacagcagctttaa
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