Garra rufa (doctor fish): 141348611
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Entry
141348611 CDS
T11039
Symbol
cpsf3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
grf Garra rufa (doctor fish)
Pathway
grf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141348611 (cpsf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
grf03021
]
141348611 (cpsf3)
03019 Messenger RNA biogenesis [BR:
grf03019
]
141348611 (cpsf3)
Transcription machinery [BR:
grf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
141348611 (cpsf3)
Messenger RNA biogenesis [BR:
grf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
141348611 (cpsf3)
U7-dependent histone pre-mRNA processing factors
141348611 (cpsf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
141348611
NCBI-ProteinID:
XP_073708985
LinkDB
All DBs
Position
13:complement(26741921..26755484)
Genome browser
AA seq
690 aa
AA seq
DB search
MATKRKADVPVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KCVQGQRVSGILVKKNFSYHILAPSDLSNYTDLAMSTVKQTQAIPFTGPFPLLLSQLRHL
TGDVEEIEISEKSTLRVFNSITVIHDQNMVMLEWFANPLNDMYADAVTTVVLEVQSNPKA
QKVVQPQEKKVDVNVYQNRLLKMFQDMFGEECVDFKDKNCLAVSVDGKTAFINLETRTVE
CEEANSEDDSLREMVELAVQRLYEAMNPVM
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggctacaaaacgtaaagcggatgtaccagtgcctgcggaagagagtgatcagctcctc
ataagaccactaggagctggtcaagaggtgggcaggtcatgcatcatcctggagttcaag
ggacgtaaaatcatgctggactgtggcatccatcctggattggagggcatggatgcattg
ccttacattgatttgatagacccagctgagattgatcttctcctcattagccactttcac
ttggatcattgtggagccttgccatggtttttacagaagacaagtttcaaaggcaggact
ttcatgacccatgccaccaaagccatttaccgctggttgctttcagactatgtgaaagtc
agcaacatctcagcagatgacatgctgtacaccgagactgatctagaagaaagcatggac
aagattgagaccatcaacttccatgaagtgaaagaagtggctggcatcaagttttggtgc
taccacgcaggtcatgttttgggagcagctatgttcatgattgagattgcaggagtgaag
ctactgtacacaggagatttctcacgtcaagaagacagacatctcatggcagctgagatt
cccagcgtcaaaccagacattctcatcacagagtctacatatggcacgcacatccatgag
aagagagaggaaagagaggctcgtttctgcaacacagtccatgacatagtgaaccgtgag
ggccgctgtctcatccctgtgtttgctttgggtcgagcccaagagcttctgctcattcta
gatgagtactggcagaatcaccctgaactccatgacattcctatctactatgcctcatcc
ctggcaaagaagtgcatggctgtgtaccagacctacgtgaacgccatgaacgataagatc
cgcaaggccattaacattaacaacccgtttgtcttcaagcatatcagcaatcttaagagt
atggaccattttgatgatattggccctagtgtggtgatggcatctccaggtatgatgcag
agcggtctttccagagagctttttgagagctggtgcaccgacaagaggaacggcgtcatc
atagcaggttattgtgtggaaggaacacttgccaagcatatcatgtctgagccagaggag
atcaccaccatgtcaggacagaagcttccgctgaagatgtccgtggactatatatccttc
tcggctcatacagactaccagcaaaccagcgagttcatccgagctctgaaacctcctcat
gtgatcctggttcatggagagcagaatgagatggctcgactgaaagccgccctgattcgg
gagtatgaggacaatgatgaggttcacattgaggtgcacaaccctcgtaacactgaggcc
gtcacgctgaacttcagaggagagaaactggctaaggtgatgggatcccttgcggataag
aagtgtgtgcagggtcagcgggtctcaggcatccttgtaaaaaagaacttcagttatcac
atccttgccccctctgacctctccaattacactgatctggccatgagcacagttaaacag
actcaagccattcccttcaccggcccttttcccttgcttttgagtcagctacggcacctg
acaggtgatgtggaggagattgagatctcagagaagagcacgctaagagtctttaacagc
atcacagtgattcatgatcaaaacatggtcatgttggagtggtttgccaatcctctgaat
gacatgtacgctgatgccgtcaccacagtggtgctggaggtacagtcaaaccctaaagct
cagaaagttgttcagcctcaagaaaagaaggtggatgtgaatgtttaccagaaccgatta
ctcaaaatgttccaagacatgtttggagaagagtgtgtcgactttaaagacaagaactgt
ctcgctgtaagtgtagatgggaaaactgcctttatcaatctggaaaccagaaccgtggaa
tgtgaggaggccaattctgaagatgattctctcagagaaatggtggagctcgctgtacag
aggctgtatgaagccatgaaccctgtcatgtga
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