Garra rufa (doctor fish): 141348613
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Entry
141348613 CDS
T11039
Symbol
vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
grf Garra rufa (doctor fish)
Pathway
grf04140
Autophagy - animal
grf04148
Efferocytosis
grf05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
141348613 (vps18)
04148 Efferocytosis
141348613 (vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
141348613 (vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
grf04131
]
141348613 (vps18)
Membrane trafficking [BR:
grf04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
141348613 (vps18)
Hops complex
141348613 (vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
Lact-deh-memb
zf-RING_16
zf-RING_Vps41
zf-C3HC4_2
zf_RING_Vps8
zf-ANAPC11
zf-RING_11
zf-rbx1
zf-RING_5
DUF2229
KNOX2
zf-C3H2C3
DUF5600
DUF4446
DUF2175
DUF1664
Apolipoprotein
zf-RING_UBOX
zf-C4H2
Motif
Other DBs
NCBI-GeneID:
141348613
NCBI-ProteinID:
XP_073708987
LinkDB
All DBs
Position
13:complement(25445743..25455075)
Genome browser
AA seq
974 aa
AA seq
DB search
MASILDQYEDSQNIRQHSRVSAANIGITHSGFVNVRLEEEKPIFNKQRIDFSPPEKINHF
SVCNNQLCMSLGKDTLLRIDLGKPDQPNQIELGRKDDSKVHRLFLDPTGSHVVISLTTSE
CVYLNRNTQKVRSLSRWRGHLIESIGWNKLIGSETNTGPILVGTSQGIIFEAEISASEGS
LFNTNPDQYFKQVHSLEEDGKPAPVCCLEVERGLESKYFIVATTRKRLFQFVGKLPEGSE
QQGFSSIFAQNQDLLPSFQEFPVNMGYSEITFYTSKLRSSPKTFAWMMGNGVLYGQLDYV
RPDSLLSDVQVWEYTPDIDLNFVKPISIVLTQFHFLLLLPDRVKGICTLNGQVVHEDVFP
EKFGTLKKMIKDPVTGLVWIYTEKAVFRYHIQREARDVWQMYMNMNKFDLAKEYCKDRPE
CLDMVLAKEAEHCFQNKRYLESAKCYALTQNYFEEIALKFIEAKQEEALKEFLNKKLSNF
KPTEKTQITLLVTWLTELYLNRLGQLETDDGKQHVFLETREEFRTFLKSPKHKDCFYNNR
NTIYDLLASHGDVDNMVYFSVIMQDYERVISHYCQHDDFSAALDVLSKHCDEKLFYKFSP
VLMQHIPKKVVDAWIQMGNRLDPKNLIPALVNYSQMGSMQQINETIRYMEFCVYELDVKD
EAIHNYLLSLYAKHKPDALLWYLEQAGTHVTDIHYDLKYALRLCAEHGYLQACVLVYKIM
ELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNCLSSC
NLLKIEDILPFFPDFVTIDHFKEAICNSLEEYNQHIEELKQEMEEATESAKRIREDIQEM
RNKYGVVESQEKCATCDFPLLNRPFYLFLCGHMFHYDCLLQEVTPHLSVYKQNKLEELQK
KLAATTQTTKSRHRPREEDTVSLGKGQGSREQIKSDIDDIIACECVYCGELMIKSIDKPF
IDPQKFDQEMSSWL
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggcatctattctggatcaatatgaagattctcaaaacatccgtcaacacagccgtgtg
tcagcggccaacatcggcattactcattcagggtttgtaaatgtaaggttggaagaagag
aaacccattttcaacaagcagcgcatcgatttctcacctcccgaaaaaattaaccacttc
tcagtatgcaacaaccagttatgcatgagtctgggtaaagacaccctgctgagaattgat
cttggcaaacctgatcagcctaatcagattgaattgggaagaaaggacgatagcaaagtg
cacagacttttcctagatcctacagggtcacatgtagtcatcagcctcaccacaagcgaa
tgcgtatacctaaaccgaaacactcaaaaggtccgaagtctgtcacgatggagaggccac
ctgattgaaagcataggctggaacaaattaatcgggtctgagaccaacaccgggccgatt
ctggttggcaccagccagggaatcatctttgaagcagagatctctgcctcagagggcagt
ctgttcaacactaacccagaccagtacttcaaacaggttcattccctagaggaggatggc
aagccagctccggtttgttgcctcgaggtggaacgtggcttggaatccaagtacttcatt
gtagcgaccacacgaaaacgcctgttccagtttgtaggaaagctgccagagggatccgag
cagcaggggttcagctctatctttgctcaaaaccaggatctcctaccaagcttccaagag
tttccagtcaatatgggctatagcgagattacgttctacacgtcgaagctgcgcagctcc
cctaagacctttgcgtggatgatgggaaatggggttttgtatgggcagctggattatgtg
cggcctgattctttactcagtgatgttcaagtgtgggaatacacaccagacatcgattta
aactttgtcaagcccatctctatagtactaacccagtttcatttcctgctcctgcttcca
gaccgcgtcaagggtatctgcactctgaatgggcaggtagtgcatgaagatgtgtttcca
gaaaagttcggcaccttaaaaaagatgatcaaagatcccgtcacaggcctcgtgtggatc
tacaccgagaaagctgtgtttcgctaccacatccagagagaggcacgggatgtttggcag
atgtacatgaacatgaataagtttgacctggccaaagagtactgcaaagaccgaccagaa
tgcctagacatggtgctcgccaaagaggcggagcactgcttccaaaacaagcgctacctg
gagagcgccaaatgctacgctctcactcagaattactttgaggagattgcgctgaagttc
attgaggctaagcaggaggaggccttgaaagagtttctaaataagaagctgagcaacttc
aagcccactgagaagactcagatcaccctgctggtcacctggctgactgaactctatctg
aaccggctcggtcagctggagaccgatgacggcaaacagcacgtctttttggagacccgt
gaagagtttcgcacctttcttaaaagccccaaacataaagattgcttctacaacaatcgc
aacaccatctacgacctgctcgcaagtcacggcgacgtggacaacatggtgtacttctca
gtcatcatgcaagattatgaacgcgttatatctcattattgccagcatgatgatttcagt
gcagctttagatgttctctccaaacattgcgatgaaaagctcttctacaagttctcccca
gtcctcatgcagcacatccctaaaaaggtggtcgatgcttggattcaaatgggaaaccgg
ttggatccgaagaatttaattccagcactggtgaactacagccagatgggcagcatgcag
cagataaatgagaccatccggtacatggagttctgtgtgtatgagctggatgtcaaagac
gaagccatccacaattacttactctcgctttatgccaaacacaagccagatgctctgttg
tggtaccttgaacaagcaggaacgcacgtcaccgacatccactacgacttgaaatatgcc
ttgcggctttgtgccgaacatgggtacctgcaagcctgtgtcttggtttacaagattatg
gagctgtatgaggaagctgtggatctagctctacaagtggatgtagatttggccaagtct
tgcgctgaccttccagaagatgacgaggagttgaggaagaagctgtggctgaagattgct
cgtcatgtggttcaggaggagaaagatgtcaagaaggccatgaactgtctgtccagttgc
aaccttctcaagattgaggacatcttgcctttctttccagattttgttaccatagaccac
ttcaaggaagcaatttgcaactccctggaagagtacaaccaacacatcgaggagctgaaa
caagaaatggaggaggccacagaaagtgccaaacgcatccgtgaagacatccaagagatg
aggaacaaatacggagtggtggagtctcaggaaaaatgtgccacttgcgatttccccttg
ctcaacagacctttctatctcttcctgtgtggacacatgttccattacgattgcctctta
caggaagtcacccctcacctctctgtctataagcagaataaattggaggagcttcagaag
aagctggcagcaaccacgcagaccaccaaatccaggcacaggcccagagaggaggatacc
gtcagcttaggcaagggccaaggaagcagagagcagatcaagtctgacattgatgacatc
atagcgtgtgagtgtgtctactgtggtgagctgatgatcaaatccatcgacaagcctttc
atagatccacagaagtttgatcaagagatgtccagctggctctaa
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