Garra rufa (doctor fish): 141348880
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Entry
141348880 CDS
T11039
Symbol
prpf39
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
grf Garra rufa (doctor fish)
Brite
KEGG Orthology (KO) [BR:
grf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
grf03041
]
141348880 (prpf39)
Spliceosome [BR:
grf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
141348880 (prpf39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_16
DUF2383
Motif
Other DBs
NCBI-GeneID:
141348880
NCBI-ProteinID:
XP_073709289
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All DBs
Position
13:39418758..39434266
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AA seq
760 aa
AA seq
DB search
MEDSGEPMTGMLDTNAPDNGDAPAMESADDTDPTATDWTAAQPPSANPESQEHEQIQQVS
ALEQFQLYSMEHIKSAAENIDHTASASEPSAESSEQQAESNGQHAEQDAVKQAGAGDSES
PSNMELEDAPKETAEAVEPAADAVASADADTAAGQEPALPTEYERLSKVVEDNPEDFNGW
VYLLQYVEQENHLVASRKAFDDFFLHYPYCYGYWKKYADIEKKHGYIHMADEVYRRGLQA
IPLSVDLWLHYITFLRENQDTSDGEAENRIRASYEHAVLACGTDFRSDRLWEAYIAWETE
QGKLANVTAVYDRILCIPTQLYQQHFQKFKEHVQSNNPKHFLSEEEFVQLRVELANANKP
SGDDAPGEELPPGTDDLPDPAKRVTEIENMRHKVTETRQETFNHNEHEVSKRWAFEEGIK
RPYFHVKALEKTQLNNWREYLDFELENGTPERVVVLFERCLIACALYEEFWIKYAKYLES
YSVEGVRHIFKKACTIHLPKKPTVHLLWAAFEEQQGSIDEARGILKAMEEAVPGLAMVRL
RRVSLERRHGNMDEAEALLQDAIANGKNSSESSFFAVKLARQLVKVQKSIGKAKKVLLEA
VEKDETNPKLYLNLLELEYSGDVQQNEAEIIACFDRALSSSMPLDQRITFSQRKVEFLED
FGSDINVLVAAYEQHQRLVAEQDSLKRKAENGSEEPDSKRQRSDDPSAASGQMMQDMTAN
HAGYNYNNWYQQYNSWGGQNSWGQYGQYGQYNQYYPPPPT
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atggaagattctggtgagcccatgaccgggatgttggacacgaatgcccctgataacggg
gacgctcctgctatggagagcgcagacgacacagacccgaccgcgaccgactggacggcg
gcacagcctccttccgcaaacccggaaagccaagaacacgagcagatccagcaggtgtct
gcgttagaacaattccagctgtattccatggagcacatcaaatctgcagcagagaacatt
gaccacacagccagcgcttcagagcccagtgcggagagctccgagcagcaggcggaatcg
aacggacagcacgcggagcaggacgcggtcaagcaggcgggagcgggcgactctgagagc
ccgtccaatatggagctggaagacgcgcccaaagaaacagcagaagcggtggagccagcg
gcagatgcagttgcaagcgcagacgcagacacagccgccggacaagaacctgcgcttccc
acagaatacgagcggctctcgaaggttgtggaggataatcctgaggacttcaacggctgg
gtgtatcttctgcagtatgttgaacaggagaaccacctggtggcttcacggaaggcattt
gatgactttttcctgcactatccctactgttacggctactggaagaagtacgctgatatc
gagaagaagcacggctacatacacatggctgatgaggtttaccgtcgaggtctgcaggcc
attccgctcagcgtcgacctgtggctgcactatatcactttcttgcgagagaaccaagac
accagcgacggagaggctgaaaatcgcatcagagcgtcctatgaacatgcagtcctggcc
tgtggaacggatttccgctctgaccgtctgtgggaggcttacatcgcttgggagacggag
caggggaagctggccaacgtcactgccgtctacgaccgcatcctctgcatccccactcag
ctgtaccagcagcatttccagaagttcaaagagcacgtccagagcaacaaccccaagcac
ttcctgtctgaggaggagtttgtgcagctgagagtggagctggcaaacgccaacaagccc
agcggagacgacgcgccgggtgaagagctcccgccgggtacggacgacctgccggatccc
gctaagagagtgacggagatcgagaacatgaggcataaggtgaccgagacgcgccaggag
acgttcaaccacaacgagcacgaagtcagcaagcgctgggccttcgaggaagggataaag
cggccgtacttccacgtcaaagccttggagaagacgcagctgaacaactggagggagtac
ctggacttcgagctggaaaacgggacgccggagcgcgtggtggttctgttcgagcgctgc
ctgatcgcctgcgcgctctacgaggagttctggatcaagtacgccaagtatctggagagc
tacagcgtcgaaggcgtccggcacatcttcaagaaggcctgcaccatacacctgcccaag
aaacccaccgttcacctgctctgggccgcctttgaggagcaacaaggcagcatcgatgag
gcgcgggggatcttgaaggcgatggaggaggccgtcccgggtctggccatggtgaggctg
aggagggtgagtctggagcgccggcacggaaacatggacgaagcggaggctttgctgcag
gacgccatcgccaacgggaagaacagcagcgagtcgtcgttcttcgccgtcaaactggcc
cgacaactcgtcaaagtgcagaagagcatcggaaaggccaagaaagtgctgcttgaggct
gtcgaaaaagatgagacgaacccgaagctgtacctgaacctgttggagctggagtacagc
ggagacgttcagcagaacgaggctgaaatcatcgcctgtttcgaccgagcgctgagcagc
tcaatgccactggatcagcgcatcaccttctctcagcgcaaagtcgagttcctggaggac
tttggcagcgacatcaatgtgctggtggcagcatatgaacaacatcagagactcgtagca
gagcaagattcgctgaagaggaaagcagagaacggctctgaggagccggactcaaagaga
cagcggtcagacgacccatcagcagcctcgggtcagatgatgcaggacatgacggccaat
cacgccggatacaactacaacaactggtaccagcagtataactcatggggcggtcagaac
tcctggggtcagtacggccagtacggtcagtataaccagtactacccaccgcccccgaca
taa
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