Christiangramia salexigens: LPB144_07120
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Entry
LPB144_07120 CDS
T04586
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
grl
Christiangramia salexigens
Pathway
grl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
grl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB144_07120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
grl03021
]
LPB144_07120
03019 Messenger RNA biogenesis [BR:
grl03019
]
LPB144_07120
Transcription machinery [BR:
grl03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LPB144_07120
Messenger RNA biogenesis [BR:
grl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LPB144_07120
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
AAA_22
AAA
DDHD
Motif
Other DBs
NCBI-ProteinID:
APG60195
UniProt:
A0A1L3J4Z1
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All DBs
Position
1552789..1554465
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AA seq
558 aa
AA seq
DB search
MFEISELKAKKLPELKEIAQTLNVPKYKTLKKLDLVYQILDYQASNPNKVKEVLTEENEG
QEQKRSKPAKSGKIGSDKKPQKSEGPSKKQEPKPQVKENNNQPVQKDEHKKPQSSKNSKD
RNPAKKDNRNDNRNENRNANRSDNRNDNRNDNRNDNRSDNRHDNRNDNKKHSGNRDSRNR
YREPDYEFDAIIESEGVLDIMQDNYGFLRSSDYNYLTSPDDIYVSQSQIRLFGLKTGDTV
QGQIRPPKEGEKYFPLIKINKINGLDPQVVRDRVSFEHLTPLFPKEKFNLAEKQATISTR
VMDLFAPIGKGQRGMIVSQPKTGKTMLLKDIANAVAANHPEVYQIILLIDERPEEVTDMQ
RNVKGEVVASTFDKEAHEHVRVANIVLEKAKRLVECGHDVVILLDSITRLARAYNTVQPA
SGKVLSGGVDANALHKPKRFFGAARNIENGGSLSIIATALTETGSKMDEVIFEEFKGTGN
MELQLDRRISNRRVFPAIDLISSSTRRDDLLLDENTVQRMWVLRKYLADMNPIEAMEFIN
DRIKQTRNNEEFLISMNG
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaatttcagaattaaaagctaaaaagcttcctgaacttaaggaaattgcccaa
actttaaacgttcctaagtacaagaccctaaaaaaacttgatctcgtataccaaatacta
gactatcaagcttctaaccctaataaagtaaaagaagttcttactgaagagaatgaaggg
caggaacaaaagagatctaaaccggcaaaatctggtaaaataggaagtgataaaaaacca
caaaaatctgaaggtccttctaaaaaacaggagccaaaacctcaggttaaggaaaataat
aatcagccggtccagaaagacgagcacaaaaaacctcagtcatctaaaaattccaaagac
cgaaatcctgctaaaaaggataatcgcaacgataacaggaatgaaaatcgcaatgctaac
cgtagcgataacagaaatgataatcgtaacgacaacagaaatgataatcgtagcgataac
cgacatgataacaggaatgacaataaaaaacatagtggaaacagagatagcagaaatcgt
taccgcgaaccagactatgagttcgatgctataattgaaagtgaaggcgttctggatatc
atgcaggataactacggtttcctaagatcgtctgactataattaccttacctctccggat
gatatttatgtttctcaatcacagataagattatttggattaaaaacaggagatacggta
caagggcaaatacgacctccaaaggaaggtgaaaaatatttcccattaatcaagatcaat
aagattaacggattggatccacaggttgtaagagaccgtgtatcttttgaacatttaacc
ccattgtttcctaaagagaaatttaaccttgccgaaaagcaggctactatttcaacaaga
gtaatggatctttttgcacctattggtaaaggtcagcgtggtatgatcgtatcacagcca
aagactggtaagaccatgttgcttaaggatattgcaaatgcagttgcggctaaccaccct
gaagtgtatcagatcatccttttaatagatgaaagacctgaagaagttaccgatatgcag
cgtaacgttaaaggtgaggttgtagcctctacttttgacaaggaagctcatgaacatgta
cgcgttgcgaacattgtactcgaaaaagcaaagcgacttgtggaatgtggtcatgatgtg
gtgatccttctagattccattacaagacttgcccgagcatataacaccgtgcaaccagca
agtggtaaagtattgagtggtggtgtagatgccaatgctcttcacaaaccaaagagattc
tttggtgccgcaagaaatatcgaaaatggaggttccctttctataattgcaactgctctt
acagaaacaggctctaaaatggatgaggtgatctttgaggaatttaaaggaaccggtaac
atggagcttcaattagacagaagaatctcgaacagaagagtattccctgctatagacctt
atatcttcaagcacacgtcgtgatgaccttttacttgatgaaaacactgtacaaagaatg
tgggttttaagaaaatacctggcagatatgaatcctatagaagctatggagttcattaat
gaccgtataaagcaaacccgtaataatgaagaatttttaatctccatgaacggttaa
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