Christiangramia salexigens: LPB144_10400
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Entry
LPB144_10400 CDS
T04586
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
grl
Christiangramia salexigens
Pathway
grl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
grl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB144_10400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grl03019
]
LPB144_10400
03016 Transfer RNA biogenesis [BR:
grl03016
]
LPB144_10400
Enzymes [BR:
grl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LPB144_10400
Messenger RNA biogenesis [BR:
grl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LPB144_10400
Transfer RNA biogenesis [BR:
grl03016
]
Prokaryotic type
tRNA degradation factors
LPB144_10400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
Rrp44_S1
RNase_II_C_S1
EntA_Immun
Motif
Other DBs
NCBI-ProteinID:
APG60788
UniProt:
A0A1L3J6L7
LinkDB
All DBs
Position
2317186..2319384
Genome browser
AA seq
732 aa
AA seq
DB search
MKNKKKNTPKIKGDISRSIIDILRKNQDKTYNYKQIASVLGVNDASSRNQIIKKLAQLAA
KKQIQEVDRGKFKIVGGKNYYTGVLDLTTKGYGYVMVEELADDVFIANKDLNSAFNGDTV
EIYIYNRRRSKRSEGEITKILKRKRTEFVGTLQLKKEFGFVVIDGNSMYTDFFVSANKLN
GAKDGDKVVVEFEEWPKKADSPFGRITRVLGTPGEHHTEIHSILAQYGLPHEFPEEIEEF
ANKIDTSINEKEIKKRRDMRDILTFTIDPKDAKDFDDALSFRKLENGNYEIGIHIADVSH
YLQPGTLLDEEAYERATSVYLVDRVVPMLPEILSNNACSLRPNEEKLTFSAVFEIDDNAN
VKDQWFGRTVTYSDERFAYEEAQHIIETGSGTIPEEISIRNHSYSVKGALVEAVVTLNRL
AKKMRSRRMRDGAISFDKVEVKFNLNEENNPVGVFFKTAKDANKLIEEFMLLANRKVAEF
IGKQSPKKTFVYRCHDEPNDEKLASLQNIVGRFGHKLNLTDRNSTSSSLNKLLEDVQGRK
EQNMVDTLAIRTMSKAYYGTENIGHYGLAFNYYTHFTSPIRRYPDVMVHRLLQYYLDKND
SASEEEYESKCHHSSEMENLATNAERDSIKYMQVKFMQDHEDEEFLGVISGVTEWGIFVE
IVENKCEGMIRLRDMNNDHYEFNADEFAVIGKRTGQTYTLGDEVYVKVKNADLIKRHLDF
TLLGNREEVEAN
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgaagaataagaagaagaatacccccaaaataaaaggagatatctccagaagtataata
gatatacttcgcaaaaatcaagataagacatacaattataagcagatagcctccgttcta
ggagtgaatgatgctagcagccggaaccagatcattaaaaaattagcacaacttgctgca
aaaaaacaaatccaggaagtagaccggggaaaatttaaaatcgtaggaggtaaaaattat
tacactggcgtactggatcttactacaaaaggttacggttatgttatggtagaagagctg
gccgatgatgtatttattgcaaataaagatctcaattctgcttttaatggtgataccgtg
gaaatttacatttataaccgccgcagaagcaaaagatctgaaggtgaaatcaccaaaatt
ttaaaaagaaaacgcaccgaatttgttggaactcttcaacttaaaaaagaatttggtttt
gtagtgatagatggaaattccatgtataccgatttctttgtttcagctaataagcttaac
ggagcaaaggatggagataaagttgtggtagaatttgaagaatggcctaaaaaggctgat
tctccatttggacgaattacccgggtacttggaacccctggagaacaccatactgaaata
cattccattcttgcacaatatggcttaccacacgaattccctgaagaaattgaggaattt
gcgaataagatagatacctccataaacgaaaaagagataaagaagagaagggatatgcgg
gatatccttacgttcactatagatccaaaggatgccaaggattttgatgatgcacttagt
tttcgaaaacttgaaaatggcaattatgagataggtattcatattgcagatgtttcacac
tatttacagccgggaactttattggatgaagaagcttatgaaagggctacttctgtttat
ctggtagaccgtgttgtgccaatgttacccgaaatcctttctaacaatgcctgttctcta
aggccaaatgaagaaaaattaactttttcagccgtatttgagatagatgataatgcgaat
gtaaaagaccagtggtttggtagaactgtgacctattctgatgagcgatttgcttatgag
gaagcgcagcatatcattgaaacaggatctggaactattcctgaagagatctccattaga
aatcattcgtattcagtaaaaggggcccttgtagaggcagtggtaacccttaatcgtctc
gcgaaaaaaatgagatcgagaagaatgcgggatggggcgatctcttttgataaggtagaa
gtaaagttcaatcttaatgaagaaaataatccggtaggcgtattctttaaaacagctaag
gatgccaataaacttattgaagagtttatgttgctggccaatagaaaagtggccgaattt
attggaaagcaaagtcctaagaagactttcgtttatcgttgtcatgatgaaccgaatgat
gagaaactcgcgtctttacagaatatcgttggaagatttggacataaattgaatcttacc
gacagaaatagtaccagttcttcgcttaacaaattacttgaagatgtacagggaagaaag
gagcaaaatatggtagatacccttgctattagaacaatgagcaaggcctattatggaacc
gaaaatattgggcattatggactagcctttaattattatacgcattttacttctccaatt
agaagatatcccgatgtgatggtgcatagattactacagtattatctggataagaatgat
tctgccagtgaggaagaatatgagagcaaatgtcaccatagcagtgaaatggaaaacctg
gctaccaatgccgaaagggattctattaaatatatgcaggtgaagtttatgcaggatcat
gaagatgaggaattccttggagttatatctggtgtaaccgaatggggaatctttgttgag
atcgtagaaaataaatgtgaagggatgatccgtttacgtgatatgaacaatgatcattac
gaattcaatgccgatgaatttgcggttattggaaagcgaacgggacaaacctatacgctg
ggtgatgaggtttatgtaaaggtcaagaatgcagatcttattaaaagacatcttgatttt
acacttttaggtaatagagaagaagtagaagcaaattaa
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