Christiangramia fulva: C7S20_09940
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Entry
C7S20_09940 CDS
T05367
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
grs
Christiangramia fulva
Pathway
grs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
grs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7S20_09940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
grs03021
]
C7S20_09940
03019 Messenger RNA biogenesis [BR:
grs03019
]
C7S20_09940
Transcription machinery [BR:
grs03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
C7S20_09940
Messenger RNA biogenesis [BR:
grs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C7S20_09940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
Mor
AAA
AAA_22
Spore_III_AA
DDHD
Motif
Other DBs
NCBI-ProteinID:
AVR45561
UniProt:
A0A2R3Z5K8
LinkDB
All DBs
Position
complement(2194623..2196299)
Genome browser
AA seq
558 aa
AA seq
DB search
MFEISELKAKKLPELKEIAQSLNVPKYKTMKKLDLVYQILDYQAANPKKVKEVLTEENQD
TTKSQEKKPKGKIGSNKRPPKSSPSKPSPDKSKEKDSSSKKDESQSAPKSQGNKGNPGKK
DNRGRTDNRSSNRNDNRNDNRNDNRNDNRGDNRNDNRNDNRSDHKKSSHDNNGNRDNRNR
YREPDYEFDAIIESEGVLDIMQDNYGFLRSSDYNYLTSPDDIYVSQSQIRLFGLKTGDTV
QGQIRPPKEGEKYFPLIKINKINGLDPQVVRDRVSFEHLTPLFPKEKFNIAEKQSTVSTR
VMDLFAPIGKGQRGMIVSQPKTGKTMLLKDIANAIAANHPEVYQIILLIDERPEEVTDMQ
RNVKGEVVASTFDKEAHEHVRVANIVLEKAKRLVECGHDVVILLDSITRLARAYNTVQPA
SGKVLSGGVDANALHKPKRFFGAARNIENGGSLSIIATALTETGSKMDEVIFEEFKGTGN
MELQLDRRISNRRIFPAIDLVSSSTRRDDLLLDEKTVQRMWVLRKYLADMNPVEAMEFIN
DRIKQARNNEEFLISMNG
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaatttcagaattaaaagctaaaaagcttcctgaacttaaggagattgctcaa
tctctaaacgttcccaagtacaaaacaatgaagaagttagacctggtttaccagattctt
gactatcaggctgcaaatcctaaaaaggtgaaagaagtacttaccgaagaaaaccaggac
accaccaagagccaggaaaagaaacctaaaggcaagataggcagcaacaaaaggccgcct
aaatcttctccatctaaaccttctccagataaaagtaaggaaaaggattcttcatctaaa
aaagacgagagtcaaagcgctcctaaaagccagggaaacaaaggaaatccaggtaaaaaa
gacaatcgcggccgtaccgacaaccgtagttccaatcgcaatgataacaggaacgacaat
cgcaatgacaacaggaacgataaccgtggtgacaatcgtaatgataatcgtaacgacaac
cgcagcgatcataagaaaagcagccatgataacaatggcaatcgcgacaatcgtaatcgc
tatcgagagcctgattatgaatttgatgccattatagaaagcgaaggagttctggatatt
atgcaggacaactatggtttcctaagatcgtcagattataattaccttacttcacctgat
gatatttacgtatcacagtcgcaaattcgtttattcggacttaaaaccggagatactgtt
cagggacaaattcgtccgcctaaagagggtgaaaaatatttccctctgatcaagatcaat
aaaataaacggccttgaccctcaggtggtaagggatcgcgtttcttttgaacatcttact
cctctatttccaaaagaaaaattcaatatagctgaaaagcaaagcacagtttcaacccgt
gtgatggatctttttgcgcccatcggaaaaggacaaagaggaatgatcgtttctcagcct
aaaacgggtaaaaccatgttgctgaaagacatcgcaaatgctatagccgccaatcatccc
gaggtttatcaaatcattttgctgatcgatgaacgcccggaagaggtgaccgatatgcag
cgaaatgtaaaaggcgaggtcgtggcttcaacttttgataaagaagcacacgagcacgtt
cgggttgcaaatattgttcttgaaaaagcaaaaagacttgtagaatgtggtcacgatgtg
gttatccttttagattctatcacccgtttggccagagcatataatactgttcaaccagcc
agtggtaaagtactaagtggtggtgtagacgcaaatgcgcttcataagccgaagagattt
ttcggtgccgcacgaaatatagagaatggaggttcgttatctattatagcgactgccctt
accgaaacaggttcgaagatggatgaagtgatctttgaagaatttaagggaaccggtaat
atggaacttcagttagaccgaagaatttcaaaccgaagaattttccctgctatcgatctt
gtttcttcaagtacacgtcgcgacgacctgctgcttgatgagaaaacggtacaaagaatg
tgggtacttcgtaagtatctcgccgatatgaatcctgtggaagctatggaatttatcaat
gacaggataaaacaagcaaggaataatgaagaatttttaatctccatgaacggttaa
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