Gordonia rubripertincta: GCWB2_03800
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Entry
GCWB2_03800 CDS
T05629
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gru
Gordonia rubripertincta
Pathway
gru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCWB2_03800 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gru03019
]
GCWB2_03800 (recQ)
03400 DNA repair and recombination proteins [BR:
gru03400
]
GCWB2_03800 (recQ)
Enzymes [BR:
gru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GCWB2_03800 (recQ)
Messenger RNA biogenesis [BR:
gru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GCWB2_03800 (recQ)
DNA repair and recombination proteins [BR:
gru03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GCWB2_03800 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
RecQ_Zn_bind
DUF3458_C
Cas3-like_C_2
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
ASR01586
LinkDB
All DBs
Position
complement(816262..818373)
Genome browser
AA seq
703 aa
AA seq
DB search
MAATLTPDQLTAANRVITSLAGEGARLRDDQLRAVTALAAGDPGTPGARVLVVQATGWGK
SAVYWSATAIIRAGGGGPTLIVSPLLSLMRDQVAAAARGGLSAATLNSSNVDEWSAIEAQ
LRAGDLDVLLVSPERLANPGFGRRVLDALAGNLGLLVIDEAHAVSDWGHDFRPDYRRVAD
VLRSVNPTTPVLATTATANARVTEDVAAQLDSGSDAPTLVLRGPLARKSLHLNVLDGLSP
VQRYGWVAQALPHLPGSGIVYVLTVADADRLVEAIRAVHGDSVEVAAYTGQLDADRRHEL
EDALLHNKVKALVATSALGMGYDKPDLGFVVHVGSPPSPVSYYQQVGRAGRALDDAVVML
LASQTDDRIWDHFATATIPDPDKMRDLLAALEAADEPQSVIQLEAATRFRRTRIELMLKQ
LAVDGVTDRTPDGWVATGKPWTYDAAHYDGVLAVRRREADIMRSYIAGRTCLMRLLTESL
DDPQAADCGRCSVCRGALSEGLPDAVDAEVVRTVTSTLRRKASTLDPRKMWPGGEFGRRG
RIPADLLAQPGRVLAHADAPEWVEVLAAARNGDERALAELGDAAVATLSSWVRETGIRAD
VIVSLRLTGTNLAETLAEHLRTVGKRGGGTLPVRLGDPPTDATGAVEAAYWRDHLGDPPE
VAGQNVMLVVDANSSGWPITLAAAALREAGAGAVLPLLIHRTV
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggccgcaaccctcacccctgaccagctgaccgccgccaaccgcgtcatcaccagcctg
gccggtgagggcgcccggctgcgcgacgaccagctccgcgcggtgaccgccctggccgcg
ggcgatcccggcacacccggcgcgcgggttctggtggtccaggcgaccggatggggcaag
tcggccgtctactggtcggccaccgcgatcatccgtgccggcggtggcgggccgacgctg
atcgtctccccgctgctgtccctcatgcgtgaccaggtggccgcagcggctcgcggcggc
ctgtccgcggcgacgctgaactcgtcgaacgtcgacgagtggtcggcgatcgaggcgcag
ttgcgggcgggtgatctcgacgtcctgctcgtctcgccggaacgcctcgccaatcccggc
ttcgggcgccgcgtgctcgacgcactggccggcaacctcggactcctggtgatcgacgag
gcccacgcggtctccgattggggtcacgacttccggcccgactaccgccgcgtggccgac
gtgctccgctcggtcaacccgacgacgccggtcctggccaccaccgcgaccgccaacgct
cgcgtcaccgaggacgtcgccgcgcagctcgactccggttccgatgccccgacgctcgtc
ctccgcgggccgctcgcccggaagtcgttgcatctcaacgtcctcgacgggctctcgccc
gtgcagcgatacggctgggtggcgcaggccctcccccatctcccgggctcgggcatcgtc
tacgtcctcaccgtcgccgacgccgaccggctcgtcgaggccatccgcgcggtacacggc
gattcggtcgaggtcgccgcctacaccggtcaactcgacgccgaccgacggcacgaactc
gaagatgcgttgctgcacaacaaggtcaaggcgctcgtcgcgacgtcggccctcgggatg
ggctacgacaagccggacctcggcttcgtcgtgcacgtcggctcgccgccgtcgccggtc
tcctactaccagcaggtgggtcgtgccgggcgcgccctcgacgacgccgtcgtgatgttg
ctggcctcgcagaccgacgaccggatctgggatcatttcgcgaccgcaaccatccccgat
cccgacaagatgcgggatctgctggccgcgctggaggccgccgacgaaccgcagtcggtc
atccagctcgaggccgccacccgcttccggcgcacgcgaatcgagttgatgctcaagcag
ctcgccgtcgacggcgtcaccgatcgcaccccggacggctgggtcgcgaccggcaagccc
tggacctacgacgccgcccactacgacggcgtgctcgcggtccgtcgccgcgaggccgac
atcatgcggtcctacatcgccggccgaacctgcctgatgcgcctgctgaccgaatcgctc
gacgacccgcaggccgccgactgcggccgctgctcggtctgccgcggcgcactgagcgag
ggactccccgacgccgtcgacgccgaggtggtacgcaccgtgacctcgaccctgcgtcgc
aaggcatcgaccctcgatccccggaagatgtggccgggaggcgaattcggccgccgaggg
cggatccccgccgatctcctcgcccagcccggtcgcgtcctcgcccacgccgacgcaccc
gaatgggtggaggtgctcgccgccgcgcgcaacggtgacgagcgtgcactggccgaactc
ggcgacgccgccgtcgccacgctctcctcctgggtccgcgagaccggtatccgcgccgac
gtcatcgtgtcgctccgcttgaccggcaccaacctcgccgagacgctcgccgagcacctg
cgcacggtcgggaaacgcggcggcggaactctccccgtccgcctgggcgatccgcccacc
gacgcgaccggcgccgtcgaggccgcctactggcgcgaccacctcggcgacccgcccgag
gtcgccgggcagaacgtgatgctcgtcgtcgacgccaacagctcgggctggccgatcacc
ctcgccgccgcggcgctccgcgaggccggggcgggtgcggtcctaccgctgctgatccac
cggacggtctga
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