Gordonia rubripertincta: GCWB2_08670
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Entry
GCWB2_08670 CDS
T05629
Symbol
dacB1
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase DacB precursor
KO
K07258
serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:
3.4.16.4
]
Organism
gru
Gordonia rubripertincta
Pathway
gru00550
Peptidoglycan biosynthesis
gru01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
gru00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
GCWB2_08670 (dacB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
gru01002
]
GCWB2_08670 (dacB1)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
gru01011
]
GCWB2_08670 (dacB1)
Enzymes [BR:
gru01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
GCWB2_08670 (dacB1)
Peptidases and inhibitors [BR:
gru01002
]
Serine peptidases
Family S11: D-Ala-D-Ala carboxypeptidase A family
GCWB2_08670 (dacB1)
Peptidoglycan biosynthesis and degradation proteins [BR:
gru01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
GCWB2_08670 (dacB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S11
Beta-lactamase2
Peptidase_S13
Transpeptidase
bpX2
Motif
Other DBs
NCBI-ProteinID:
ASR02543
LinkDB
All DBs
Position
complement(1875398..1876633)
Genome browser
AA seq
411 aa
AA seq
DB search
MIAAGPTSVGRAGAVPVPTGAPPAFTTPVTDHCPHKTGTPPAVDESEVVAPGSTTPPPLP
VPTPPIGGEDLEYCGVVADPAAGPVPPRLTSAGWLIADLDSGNVIAAKDPHGRYRPASTI
KVLLALIVLDELDLDATVVPTAEDWSTEGDSCGMGPGGRYSVRDLLTGLLMVSGNDCANA
LARELGGVETTLEKMNERARELGAADTRAASPSGLDAAGMSSSPYDLALIYREAMAQETF
RELIAKPTFRFPGYPRRPDVPGDKDHPAYDMYSSNRLLVDGYPGMLGGKTGYTDDARKTY
VGAAERDGRRILVVQMYGLSVEGDMYWDQAREMFEYGFRADPNISVGRLVESSGEAVETT
APHAASSADSHLASTGSDAASPISVRILIGLLAALAAVVLLLVGLRLFGRR
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgatcgccgcaggtccgacaagtgtcggacgagccggcgcggttcccgtcccgaccggt
gcaccgccggccttcacgacgcccgtcaccgaccactgtccgcacaagaccggcacccca
ccggccgtcgacgagtccgaggtcgtcgcacccggttcgacgaccccgcccccgttgccg
gtccccaccccgccgatcgggggcgaggacctcgagtactgcggcgtcgtcgccgatccc
gccgcgggtccggttccccctcggctcacctcggccgggtggctgatcgccgacctcgac
tcgggcaacgtcatcgcggccaaggatccgcacgggcggtaccggccggcttcgacgatc
aaggtgctgctcgcgctcatcgtgctcgacgagctcgatctcgatgcgacggtcgtcccg
accgccgaggactggagcaccgagggcgactcctgcgggatggggcccggcggtcgctac
tccgtccgcgacctgctgaccggactgctcatggtgtcgggcaacgactgcgccaacgcc
ctcgcgcgcgaactcggcggtgtggagaccacgctggagaagatgaacgaacgcgcccgc
gagctgggcgccgccgacacccgcgcggccagcccgtcgggtctcgacgccgccgggatg
tcctcctcgccgtacgacctcgccctgatctaccgggaagccatggcacaggagaccttc
cgggagttgatcgccaagcccaccttccggttccccgggtatccccgccgacccgatgtg
cccggcgacaaggaccatccggcgtacgacatgtacagcagcaaccgccttctggtggac
ggttatccgggcatgctcggcggcaagaccggatacaccgacgacgcccgcaagacctac
gtcggcgcggccgaacgcgacggacgccgcatcctcgtcgtccagatgtacggactgtcg
gtcgaaggcgacatgtactgggaccaggcgcgggagatgttcgagtacggattccgggcc
gacccgaacatctcggtcggacgcctcgtcgaatcatccggcgaggcagtcgaaaccacc
gcaccgcacgccgcgtcgtcggcggactcccacctcgcgagcacgggttccgacgccgcc
tcccccatctcggtccgcatcctcatcggactcctcgcagccctcgccgccgtggtcctg
ttgctggtgggattgaggctcttcgggcgtaggtga
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