Gordonia rubripertincta: GCWB2_09340
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Entry
GCWB2_09340 CDS
T05629
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
gru
Gordonia rubripertincta
Pathway
gru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCWB2_09340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gru03021
]
GCWB2_09340
03019 Messenger RNA biogenesis [BR:
gru03019
]
GCWB2_09340
Transcription machinery [BR:
gru03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
GCWB2_09340
Messenger RNA biogenesis [BR:
gru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GCWB2_09340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
NACHT
Motif
Other DBs
NCBI-ProteinID:
ASR02676
LinkDB
All DBs
Position
2025668..2027749
Genome browser
AA seq
693 aa
AA seq
DB search
MTDTDLITAPAEQESAGSAGPDSGQPAKTRARAARTGLSGMVLSELRTVAGELGIKGTSG
MRKGDLIAAIKERQGGGAAKTADAKTADAKAEAKSPEAKNTEAKNTEAKATEGASAEAKA
DTKTSETRRRSAKVSSEDGQLSIVESAEDGDSDRAPRSGKKNANPETGEQNADQSSKGGE
SKGDANADSPKGGDSDAGEQRNRRNRNQNRDNQNREGGQNREGGQNRDNQNREGGQNRDN
QNREGGQNREGGQNRDGGQNRGGGQNRDNRDDRDDDGEGGGRRRGRRFRERRRGRDREGS
SQNEPQVSEDDVLQPVAGILDVLDNYAFVRTSGYLAGSNDVYVSMNMVRKNGLRRGDAIT
GAVKVPREGDQQNQRQKFNPLVRLDTVNGGDVEAAKKRPEFNKLTPLYPNQRLRLETTPD
RLSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITVNNPECHLMVVLVDERPEE
VTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVESGKDVVVLLDSITRLGRAYN
NASPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEF
KGTGNAELKLDRKISERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRLLSGLDSQQA
IDLLISQLKKTKTNIEFLMSVQKTAPGAGGNDD
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
gtgacagatacggacctgatcaccgcacctgccgagcaggaatccgcgggttcggccggc
cctgactcggggcaaccggccaagacgcgcgctcgtgcagcacgcaccggcctgtccggc
atggtgctcagcgagctgcggaccgttgccggtgaactcggcatcaagggcacctccggg
atgcgcaagggcgatctgatcgccgccatcaaggagcgccagggcggcggagccgccaag
accgcagacgccaagaccgcagacgccaaggccgaggccaagagccccgaagccaagaac
accgaggcgaagaacaccgaggcaaaggccaccgaaggtgcctccgccgaggccaaggcc
gacaccaagacctctgagacccggcgccggagcgccaaggtctcgtccgaggacgggcag
ctgtcgatcgtcgagtccgccgaagacggcgactccgatcgggcgccccgctcgggcaag
aagaacgcgaacccggagaccggcgagcagaacgccgaccagtcctccaagggcggcgag
tcgaagggcgacgccaacgcggattcgccgaagggcggcgactccgacgccggtgagcag
cgcaatcgccgcaaccggaaccagaaccgcgacaaccagaaccgtgagggtggccagaac
cgcgagggcggccagaaccgggacaaccagaaccgcgagggcggccagaaccgcgacaac
cagaaccgtgagggtggccagaaccgcgagggcggccagaaccgcgacgggggccagaac
cgcggcggcggtcagaaccgggacaaccgtgacgaccgtgacgacgacggcgaaggcggc
ggtcgtcgccggggacgccgttttcgcgagcgtcgtcgtgggcgtgaccgcgagggcagc
agccagaacgagccgcaggtctccgaggacgacgtgttgcagcccgtcgccggcatcctc
gacgtgctcgacaactacgccttcgtccgcacctctggttacctcgccggttccaacgac
gtctacgtgtcgatgaacatggtgcgcaagaacggacttcgacgcggcgacgcgatcacc
ggtgcggtcaaggtgccgcgcgagggcgaccagcagaaccagcgccagaagttcaatccg
ctcgtgcgtctcgacaccgtcaacggcggtgacgtggaggcggcgaagaagcgccccgag
ttcaacaagctcaccccgctgtacccgaaccagcgactccgcctggagaccacgccggat
cgactgtccacccgcgtgatcgacctgatcatgcctatcggcaaggggcagcgtgcactg
atcgtctcgccgccgaaggccggtaagacgacgatcctgcaggacatcgccaacgcgatc
accgtcaacaacccggaatgtcacctcatggtggtgctcgtcgacgagcgtcccgaagag
gtcaccgacatgcagcgctcggtcaagggtgaggtcatcgcctcgaccttcgaccgtccg
ccgtcagaccacacctcggtcgccgaactcgccatcgaacgcgccaagcgtctcgtcgag
agcggcaaagacgttgtggtgcttctggactcgatcacccgtctgggtcgcgcatacaac
aacgcgtcgccggcgtcgggccgaatcctctccggtggtgtcgattcgaccgctctgtac
ccgccgaagcgattcctcggtgcggcgcgcaacatcgagaacggcggatcgctgacgatc
atcgccaccgctatggtcgagaccggttcgaccggtgacacggtcatcttcgaggagttc
aagggcaccggcaacgccgagctcaagctcgatcgcaagatctccgagcgccgcgtgttc
cccgcggtcgacgtcaacccgtcgggcacccgcaaggacgagctcctgctctcgcccgac
gagttcgccatcgtccacaagctgcgtcgtctcctgtccggtctcgactcgcagcaggcg
atcgatctgctgatcagccagctcaagaagaccaagacgaacatcgagttcctgatgtcg
gtccagaagaccgctccgggagccggtggcaacgacgactaa
DBGET
integrated database retrieval system
