Gordonia rubripertincta: GCWB2_09665
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Entry
GCWB2_09665 CDS
T05629
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gru
Gordonia rubripertincta
Pathway
gru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCWB2_09665 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gru03019
]
GCWB2_09665 (deaD)
03009 Ribosome biogenesis [BR:
gru03009
]
GCWB2_09665 (deaD)
Enzymes [BR:
gru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GCWB2_09665 (deaD)
Messenger RNA biogenesis [BR:
gru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GCWB2_09665 (deaD)
Ribosome biogenesis [BR:
gru03009
]
Prokaryotic type
rRNA helicases
GCWB2_09665 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
HEM4
Cas3-like_C_2
P-loop_SecA
adh_short
Motif
Other DBs
NCBI-ProteinID:
ASR02736
LinkDB
All DBs
Position
2095659..2097446
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AA seq
595 aa
AA seq
DB search
MSTSGQGEHGAPADHSAHDIPGGTFDDLDIEPRVRAAITDVGYETPSPIQAATIPPLMAG
RDVVGLAQTGTGKTAAFAIPILSRLDTSARTPQALILAPTRELALQVSEAFGRYSAHMPE
VKVLPIYGGQSYGVQLAGLRRGAQVIVGTPGRVIDHLDKKTLDISGLEFLVLDEADEMLT
MGFAEDVERILAETPDTKQVALFSATMPSSIRRLAQRYLKSPQEITVKSKTATAQNITQR
YLQVSHQRKLDALTRFLEVEEFDAMIVFVRTKQATEELAEKLRSRGLSAVAINGDLAQAQ
RERTINQLKSGSIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSG
NALLFVSPRERHLLRAIERATRQELTEIGLPSVDDVNAQRVAKFGESITQNLSSDNLDLF
RGLIENYARDNDVAMADIAAALALETRDGGFLLAPDPPESERRANREQRERTPRRPGASF
ATYRIAVGRKHKVSPGAIVGAIANEGGLTRADFGNISIRDDFSLVELPDDLDNETLSQLR
HTKIGKNPIDIRKDLGAPRGRGGKRGGPQGGRDGRRDNFGGKRPSPRVAGRGRRA
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgagtacttccggacaaggcgagcacggcgcgccggctgaccactctgcacacgacatc
cccggcggtacgttcgacgatctggacatcgagccacgcgttcgtgccgcgatcaccgac
gtcggctatgagaccccctcgccgattcaggccgccacgatcccgccgctgatggccggc
cgcgacgtcgtcggactcgcgcagaccggtaccggcaagaccgccgccttcgcgatcccg
atcctctcgcggctcgacacctcggcgcgcacgcctcaggcgctgatcctcgcaccgacg
cgtgagctcgccctgcaggtgtccgaggccttcggccgctactccgcacacatgcccgag
gtcaaggtgctgccgatctacggcggacagtcctacggtgtgcagctcgcgggcttgcgc
cgcggcgcccaggtcatcgtgggtactcccggtcgcgtgatcgaccacctcgacaagaag
accctcgacatctccggactcgagttcctcgtgctcgacgaggccgacgagatgctcacg
atgggcttcgccgaggacgtcgagcgcatcctcgccgagaccccggacaccaagcaggtc
gcactcttctccgcgaccatgcccagctcgatccgccggctcgcccagcgctacctgaaa
tctccgcaggagatcaccgtcaagtccaagacggcgaccgcgcagaacatcacgcagcga
tacctgcaggtgtctcaccagcgcaaactcgacgcgctgacccggttcctcgaggtcgag
gaattcgacgcgatgatcgtgttcgtccgcaccaagcaggcgaccgaggagctcgcggag
aagctccgatcgcgcggactgtctgcggtcgccatcaacggcgacctcgcccaggcacag
cgcgagcggaccatcaaccagctcaagagcggctcgatcgacatcctcgtggcgaccgac
gtggccgcccgcggcctcgacgtcgaccgcatctcgcacgtcgtcaactacgacatcccg
cacgacaccgagtcgtacgtgcaccgcatcggccgcacgggtcgcgccggccgttcgggc
aacgcgctgctgttcgtctcgccgcgtgagcgccacctgctacgggcgatcgaacgggcc
acgcgccaggagctcaccgagatcggcctgcccagcgtcgacgacgtgaacgcgcagcgc
gtcgcgaagttcggcgagtcgatcacccagaacctgtcctcggacaacctggacctgttc
cgcggactcatcgagaactacgcccgcgacaacgacgtggcgatggccgacatcgccgcc
gcgctggccctcgagacgcgcgacggcgggttcctgctggcacccgatccgccggagtcg
gagcgacgggcgaaccgcgagcagcgggagcgcaccccgcgtcgtcccggagcgagcttc
gccacctaccgcatcgcggtcggccgcaagcacaaggtctctccgggtgcgatcgtcggg
gcgatcgccaacgagggcggtctcacccgcgcggacttcggcaacatcagcatccgcgac
gacttcagcctcgtcgagctgcccgacgatctcgacaacgagaccctgtctcagctccgc
cacaccaagatcggcaagaacccgatcgacatccgcaaggatctgggtgcgccgcggggt
cgtggtggcaaacgcggcggaccgcagggtggtcgcgacggtcgtcgcgacaacttcggc
ggcaagcggccatcgccgcgcgtcgccggacgcggccgccgggcctga
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