Gordonia rubripertincta: GCWB2_14030
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Entry
GCWB2_14030 CDS
T05629
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
gru
Gordonia rubripertincta
Brite
KEGG Orthology (KO) [BR:
gru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gru03016
]
GCWB2_14030 (rnd)
Enzymes [BR:
gru01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
GCWB2_14030 (rnd)
Transfer RNA biogenesis [BR:
gru03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GCWB2_14030 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Lipase_GDSL_2
LPG_synthase_C
Motif
Other DBs
NCBI-ProteinID:
ASR03597
LinkDB
All DBs
Position
3077460..3078752
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AA seq
430 aa
AA seq
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MSTVDTPPGNKAENLPPEDEAPEVEPLLAPAGGVPPVLSTAAEFSDAAEALAAGEGPIAV
DTERASGYRYSQRAYLIQIKRRGSGSFLLDPIGNPEALAPVIDALRGPEWVLHAADQDLP
CLRELGFECVELYDTELAGRLLGLAKVNLAAMVAQFLGLGLLKGHGAADWSRRPLPDDWL
NYAALDVEVLVELRDAMDAALAESGKDGWAREEFAYVLSRPPAPPRTDRWRKTSNIHTVK
SARALAAVRELWTSREELAERRDVAPGRVLPDTAIVNAATVDPKSNNELTRLPIFGGPRQ
RRQAGIWLSALQRARELPDSELPARKTNGPGLPPVSRWEQRNPEAAARMQKVRPALKEVA
ESHTLPVENLLAPDVVRQLCWDGLTEPVTAEAVDAHLAAAGARPWQRRLSVDALTEALGE
VGATETGPSE
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaccgtggacacaccaccgggaaacaaagccgagaatctgccgccggaggacgag
gcccccgaggtcgagccgctgttggcccccgccgggggtgtcccgccggtgctgtcgacc
gccgcggagttctccgacgccgcggaggcgctcgcagcgggcgagggccccatcgccgtc
gacaccgaacgtgcctcgggctaccgctactcccagcgcgcctacctgatccagatcaaa
cgacgcggctccggcagcttcctgctcgacccgatcggcaatcccgaggcactcgctccc
gtgatcgacgcgctgcgcgggcccgaatgggtgctgcacgccgccgaccaggatcttccc
tgcctacgcgaactcggcttcgaatgcgtcgagctgtacgacaccgaactcgccggacgc
ctgctcggcctggcgaaggtgaacctcgccgcgatggtcgcccagttcctcggcctcggc
ctgctcaagggtcacggcgcggcggactggtcccgacggccacttcccgacgactggctg
aactacgccgccctcgacgtcgaggtgctcgtcgaactccgggacgcgatggacgcggca
ctggccgagtccggcaaggacggctgggcccgcgaggagttcgcctacgtcctgtcccgc
ccgccggccccgccgcgcaccgaccgctggcgcaagacgtccaacatccacaccgtcaag
tcggctcgtgccctggccgcggtccgcgaattgtggacgtcgcgtgaggaattggcggag
cgtcgggatgtcgccccgggccgcgtgctgcccgacaccgcgattgtcaacgccgcgacc
gtcgacccgaaatcgaacaacgaactgacccgcctgccgatcttcggcggccctcgccag
cgccggcaagccgggatctggttgagcgccctgcagcgggcccgcgaactcccggacagc
gaactgccggcccgcaagaccaacggccccggacttcccccggtgagccgctgggaacag
cgcaacccggaggctgcggcgcggatgcagaaggtgcgcccggccctcaaagaggtcgcc
gagagccacaccctcccggtggagaacctcctcgccccggacgtcgtccgccagctgtgc
tgggacggactgaccgaaccggtgaccgccgaggccgtcgacgcgcacctcgccgccgcc
ggggcccgtccgtggcagcggcggctcagcgtggacgcgttgaccgaggcgctgggcgag
gtcggggccaccgagaccggaccgtcggagtag
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