Gordonia rubripertincta: GCWB2_15530
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Entry
GCWB2_15530 CDS
T05629
Symbol
dnaE2
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gru
Gordonia rubripertincta
Pathway
gru03030
DNA replication
gru03430
Mismatch repair
gru03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GCWB2_15530 (dnaE2)
03430 Mismatch repair
GCWB2_15530 (dnaE2)
03440 Homologous recombination
GCWB2_15530 (dnaE2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gru03032
]
GCWB2_15530 (dnaE2)
03400 DNA repair and recombination proteins [BR:
gru03400
]
GCWB2_15530 (dnaE2)
Enzymes [BR:
gru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GCWB2_15530 (dnaE2)
DNA replication proteins [BR:
gru03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GCWB2_15530 (dnaE2)
DNA repair and recombination proteins [BR:
gru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GCWB2_15530 (dnaE2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
ASR03893
LinkDB
All DBs
Position
complement(3397644..3401186)
Genome browser
AA seq
1180 aa
AA seq
DB search
MTDSFVHLHNHTEYSMLDGAAKVSPLFAEAKRLGMTAIGMTDHGNMFGASEFYNTAIKND
IKPIIGIEAYIAPGSRFDTKRVQWGSREQKSDDVSGSGAYTHMTMVAENATGLRNLFKLS
SLASIEGQLGKWSRMDADLIAEYAEGIIATTGCPSGEVQTRLRLGHDREALEAAAKWQEI
FGKENFYLELMEHGLEIERRVRDGLLDIGRKLGIKPIVTNDCHYVTKEHAAAHEALLCVQ
TGKTLSDPTRFKFDGDGYYLKSAAEMREQWDSVVPGACDNTLEIGERVQSYKDVFTHRDR
MPVFPVPDGETQQTFLRKEVAKGLRERRFAGTEVPQEYLDRANYELDVIIQMGFPAYFLV
VGDLIRHALEVGIRVGPGRGSAAGSLVAWALGITNIDPIPHGLLFERFLNPERVSMPDID
IDFDDRRRGEMVRYATERWGSDKVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADRITK
ALPPPIMAKDIPVWGITNPEHERYGEATEVRTLIETDPDVKKIYDTALGLEGLIRNAGVH
ACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDALEN
IKLNRGIDLDLDSLPLEDEKTYELLARGDTLGVFQLDGAAMRELLKMMQPTGFEDIVAVL
ALYRPGPMGVNAHTDYAKRKNGLQEIRPIHPELEEPLKEILSETYGLIVYQEQIMQIAQK
VAGYSLGQADLLRRAMGKKKKEILDEAYDGFAEGMRNNGFSQAAITALWDTVLPFAGYAF
NKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAIYLADCRKLGITVLPPDV
NESQRNFAAVGADIRFGLAAIRNVGSGVVGSIINAREEKGKFTSFSDYLGKIDVTACNKK
VTESLIKAGAFDSLGHPRKGLFLVHAEAVESVIGTKKAEAIGQFDLFGDAGGADDSMAEV
FAVKVPEEEWDTKHKLAIEREMLGLYVSGHPLAGVEHAIAAHTDTSITSLLEGNISDGAQ
ITIGGIISSVTRRVNKKGEPWAAVTLEDMVGGVEVYFFPRAYVAYGMDIVADNIVLIKAR
VNLREDSMMISANDLAVPDLETAGATKPVALTLSARLCTPDRVQALKQVLTRHPGMADVH
VTLVSDKRQTQLKLTESLRVAPSSALMGDLKALLGPSCLG
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
gtgacggactcgtttgttcacctgcacaaccacaccgagtactcgatgctcgacggtgcg
gccaaggtgtcaccgttgttcgccgaggccaaacggctgggcatgaccgcgatcggcatg
accgaccacgggaacatgttcggtgccagcgagttctacaacaccgcgatcaagaacgac
atcaagccgatcatcggtatcgaggcctacatcgcacccggttcgcggttcgacaccaaa
cgtgtccagtggggttcgcgcgaacagaagagcgacgacgtctcgggttcgggtgcctac
acgcacatgacgatggtcgccgagaacgcgaccggtctgcggaacctgttcaagctgtcc
tcgctcgcctccatcgaggggcagctcggcaagtggtcccgtatggacgccgacctgatc
gccgaatacgccgagggcatcatcgcgaccaccggctgcccgtcgggtgaggtgcagacc
cgtctgcgcctgggtcacgaccgcgaagccctcgaggccgcggcgaagtggcaggagatc
ttcggcaaggagaatttctacctcgagctgatggagcacggcctcgagatcgagcgccgc
gtgcgcgacggtctcctcgacatcggccgcaagctcggcatcaagccgatcgtcaccaac
gactgccactacgtcaccaaggagcatgccgccgcccacgaggcgctgctgtgcgtgcag
accggcaagacgctgtccgaccccacccgcttcaagttcgacggcgacggctactacctg
aagtcggccgcggagatgcgcgagcagtgggactcggtggtcccgggcgcatgtgacaac
acgctcgagatcggcgagcgcgtccagtcctacaaagacgtcttcacccaccgcgaccgc
atgccggtcttcccggtgcccgacggcgagacccagcagaccttcctgcgcaaggaggtc
gcgaaggggctccgggagcgtcgtttcgccggtaccgaggtgccgcaggagtacctcgat
cgcgccaactacgagctcgacgtcatcatccagatgggtttcccggcctacttcctggtg
gtcggcgacctgatccgccacgctctcgaggtcggcatccgcgtcggcccgggccgtggt
tcggcggcgggttcgctcgtcgcctgggcgctgggcatcaccaacatcgacccgatcccg
cacggactgctgttcgagcgattcctcaaccccgagcgcgtgtcgatgcccgatatcgac
atcgacttcgacgaccgccgtcgtggcgagatggtccgctacgcgaccgagcggtggggc
agcgacaaggtcgcccaggtcatcaccttcggaaccatcaagaccaaggccgccatcaag
gactccgcccgagtccagttcggccagccgggtttcgcgatcgccgaccgcatcaccaag
gcgttgccgccgcccatcatggccaaggacatcccggtctggggcatcaccaaccccgag
cacgagcgctatggcgaggccaccgaggtccgcacgctcatcgagaccgacccggatgtc
aagaagatctacgacacggcactcggcctcgagggcctgatccgcaacgccggtgtccac
gcctgtgccgtgatcatgtcgtcggagccgctgaccgacgcgatcccggtgtggaaacgt
gcgcaggacggcgcgatcatcaccggctgggactacccgtcgtgcgaggccatcggcctg
ctgaagatggacttcctgggtctgcgcaacctcaccgtcatcggtgatgccctggagaac
atcaagctcaaccgcgggatcgacctggacctcgactcgctgccgctggaggacgagaag
acctacgagctgctcgcccgcggcgacacgctcggcgtgttccagctcgacggcgcggcc
atgcgcgaactcctgaagatgatgcagcccaccgggttcgaggacatcgtcgccgtcctg
gcgctgtaccgacccggtccgatgggtgtgaacgcccacaccgactacgccaagcgcaag
aacggtctccaggagatccggccgatccacccggagctcgaggagccgctgaaggagatc
ctctccgagacctacggtctgatcgtctaccaagagcagatcatgcagatcgcgcagaag
gtcgccgggtactcgctcggacaagcagacctgctccgtcgcgcgatgggcaagaagaag
aaggagatcctcgacgaggcctacgacggcttcgcggagggtatgcgcaacaacggcttc
tcgcaggcggcgatcaccgccctgtgggacacggtgttgccgttcgccggctacgcgttc
aacaaatcgcacgccgcgggctacggtctcgtctccttctggaccgcctacctgaaggcg
aactatcccgccgagtacatggccggtctgctcacctcggtcggcgacgacaaggacaag
gcggcgatctacctcgccgactgccgcaagctcggcatcaccgtcctcccgccggacgtc
aacgagtcgcagcgcaacttcgcggccgtcggtgccgacatccgcttcggtctcgccgcc
atccgcaacgtcgggtcgggcgtcgtcgggtcgatcatcaacgcgcgcgaggagaagggt
aagttcaccagcttctccgactacctcggcaagatcgacgtcaccgcctgcaacaagaag
gtgacggaatcgctgatcaaggcgggcgccttcgactccctcggccatccgcgcaagggc
ttgttcctcgtgcacgccgaagccgtcgaatcggtcatcggcaccaagaaggccgaggcg
atcggacagttcgacctcttcggcgacgccggcggagccgacgactcgatggccgaggtc
ttcgccgtcaaggtccccgaggaggagtgggacaccaagcacaagctcgcgatcgagcgg
gagatgctgggactctacgtctccgggcatccgctggccggcgtcgaacacgccatcgcc
gcgcacaccgacacctcgatcacgtcgctgctggaaggcaacatctccgacggtgcgcag
atcacgatcggcggcatcatctcgtcggtgacgcgccgggtgaacaagaagggggagccg
tgggccgcggtcaccctcgaagacatggtcggtggtgtcgaggtctacttcttcccgcgc
gcctacgtcgcgtacgggatggacatcgtggccgacaacatcgtgctgatcaaggctcgt
gtgaacctgcgcgaggacagcatgatgatctccgccaacgatctcgccgtccccgacctg
gagaccgccggcgcgaccaagccggtagcactcacgctgtccgcccgactctgcaccccg
gatcgggtgcaggcgctcaagcaggtgctgacccgacatccgggtatggccgacgtgcac
gtcacgctggtcagcgacaagcggcagacgcagctcaagctgaccgagtccctgcgggtg
gcgccgagctcggcgctgatgggcgacctgaaagcactgctcggacccagttgcctgggc
tga
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