Gordonia rubripertincta: GCWB2_17505
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Entry
GCWB2_17505 CDS
T05629
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gru
Gordonia rubripertincta
Brite
KEGG Orthology (KO) [BR:
gru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gru03016
]
GCWB2_17505 (rtcB)
Enzymes [BR:
gru01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GCWB2_17505 (rtcB)
Transfer RNA biogenesis [BR:
gru03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GCWB2_17505 (rtcB)
Prokaryotic type
tRNA splicing ligases
GCWB2_17505 (rtcB)
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ASR04280
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All DBs
Position
3813779..3814981
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AA seq
400 aa
AA seq
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MPEMIAPKVLNFASILDDTTRRQAAEISSLPFIHPHVALMPDAHAGKGSAVGTVIPTVDA
VIPAAVGVDIGCGMIGVATSIGRNDLDGFDLADLRRRVESTIPLSPGNYNETVRFPHTQA
RIAELEESASDNDVDLSHSPKWREQLGSLGGGNHFIELCEQVGSGDTGTIWLFLHSGSRG
VGNKIAQKHIRVAQDRCRREHIGLPHPDLAYLDSGTAEFDDYIRELRWAQRFAFENRAEM
MDRFISVFDVWLGDNGFRTPESIEVRRINCHHNYTENVEIADKAVWLTRKGAIDASAGTY
GLIPGSMGTRSYVVRGRGNEPGLFSAPHGAGRRFSRTKAKKLFTLVDLAEAMKGIEYRHG
REWIDEIPAAYKPIDQIMDDARDLVEVEAVLTQLLNVKGT
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagatgatcgcaccgaaggtactcaacttcgcctcgatcctcgacgacacgacc
cggagacaggcggccgagatctcgtcgctgccgttcatccatccgcacgtggcgctgatg
cccgacgcccacgcgggcaaggggtctgcggtcgggacggtcatcccgaccgtcgacgcc
gtgatcccggccgcggtcggcgtcgacatcggctgcgggatgatcggcgtcgctacctcg
atcggcaggaacgacctggacggtttcgacctagccgacctgcggcgacgcgtggagtcg
acgatcccgctgtccccgggcaactacaacgagaccgtccggttcccgcacacccaggcc
aggatcgccgagctggaggagtccgcctcggacaacgacgtcgacctgtcccactcaccg
aagtggcgtgagcagctgggttcgttgggcggcggcaaccatttcatcgagttgtgcgaa
caggtcgggagcggagacaccggtaccatctggctgttcctgcactccggtagccgcggc
gtcggaaacaagatcgcgcagaagcacatccgggtcgctcaggaccggtgccgtcgtgag
cacatcggcctcccccatcccgacctcgcctacctcgactccggcaccgcggagttcgac
gactacatccgagagttgcggtgggcgcagcggttcgccttcgagaaccgggccgagatg
atggaccgattcatcagcgtgttcgacgtatggctgggcgacaacggtttccggaccccg
gagtcgatcgaggtacgccggatcaactgccaccacaactacaccgagaacgtggagatc
gccgacaaggcggtgtggctcacccgtaagggtgcgatcgacgccagtgccgggacgtac
ggcctgatcccggggtcgatgggcacgaggtcgtatgtggtgcgcggacgtggaaacgag
ccggggttgttctccgccccgcacggtgcaggccggcggttctcacggaccaaggcgaag
aagctgttcacgctcgttgacctcgccgaggcgatgaaaggcatcgaataccgtcacggc
agagaatggatcgacgagatccccgccgcctacaagccgatcgaccagatcatggacgac
gcccgcgatctggtcgaggtcgaggcggtcctgacccagctgctcaacgtgaagggcacc
tga
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