Gordonia rubripertincta: GCWB2_18140
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Entry
GCWB2_18140 CDS
T05629
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
gru
Gordonia rubripertincta
Pathway
gru03420
Nucleotide excision repair
gru03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GCWB2_18140 (pcrA)
03430 Mismatch repair
GCWB2_18140 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gru03400
]
GCWB2_18140 (pcrA)
Enzymes [BR:
gru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GCWB2_18140 (pcrA)
DNA repair and recombination proteins [BR:
gru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GCWB2_18140 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
GCWB2_18140 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ASR04401
LinkDB
All DBs
Position
complement(3944712..3948122)
Genome browser
AA seq
1136 aa
AA seq
DB search
MTSGTQTGGLTTGRTTIGAKSLAAALGLPDPTPEQVAVIEAPVEPMLVVAGAGAGKTETM
ASRVVWLVANQIVAPDEILGLTFTRKAASELGARIRRRLSMLSGAPALRTWDPDGALAAR
LRGADPEVSTYHAYAGRLIADYGLLLPVEPSSTLLTETELWQLAFSLVSSWPGELNTKKV
PASVTESVLKLYGEMSEHLVDIDDLAKAGSRLYELIDTLPKGPKQRDKPTQALMKVKEVI
DERRELIPMVIALGETMRAQSALDFGSQMSLAAKLVVSNPEVVAAERTAFRAVLLDEYQD
TGHSQRVLLSTLFGGHDPSRQSVAVTAVGDPIQSIYGWRGASAANLPRFARDFPRPDGTP
AERRELLTSWRNAAQGLRLANQISEELRRRGIPVSILRPRPDAPHGTATIALTETVLDER
NWIADEVERRYRAAETAGEAPPTTAILVRRNEDSAPLAAELESRGIPTEVVGIGGLLHVP
EIEDIVATLRVMADPMAGTAVMRLLTGARWRLGAKDLAALWRRATTLAAESYAEAGGVVT
SREELDAALDAVLPTEIVDRAGIADAVVDPGDPSDYSPEGYARIRAFGAQLESLRRRIGQ
PLPELVADVENTIGVGVEAQIRARRMRGAITGREHLDAFADYVSHYADRPGANLPGLLAF
LDAAESIEKGLEPGKIEVAEQRVQILTVHAAKGLEWDVVAIPHLAKGIFPSAKADTTWLG
SARELPADLRGDLAIPAESADGTPEGFPVLKIDTVGDRKQLEDALSDHKAAISERRLEED
RRLLYVALTRARHDLLISAHHWSETGDKPRGGSDFFDELMVAVDEAIADPAVDSTGLSVA
VRIPPPAEDATNPLAERVVAQPWPRDPLAGRRDAVQSAAELVLDAITAREAPALFATPDA
SDDPEMLPMPPDPEDEVAAWEAEVSALLAEHHQANQALVEVTLPTHLSVSQLVELDADEA
EFARRLRRPTPFRPNPMARRGTAFHAWVERWFGATRLLDIDELPGAADATASPDADLDAL
RDAFLASRWANRSPTEVEVPFETVIGGIVVRGRIDAVFAEKDGSWTVVDWKTGVVPEPAK
RESLFIQLAAYRIAWAQLAGVPVEKVHAAFHYVRDGHTLEADDLPDEATLAAKLAK
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgactagcggaacccagaccggtggactcacgaccggccgcacgacgatcggcgcgaag
tcgctggccgcggcgctcggccttcccgacccgacccccgaacaggtcgcggtgatcgag
gcgccggtcgaaccgatgctcgtcgtcgccggagccggggcgggcaagaccgagacgatg
gcctcgcgggtggtgtggctcgtcgccaaccagatcgtggcacctgacgagatcctcgga
ctcaccttcacacgcaaggccgccagcgagctcggcgcacgcatccggcgtcgcctgtcc
atgttgtcgggcgcgcccgcactgcggacctgggacccggacggggcgctggccgcacgc
ctgcgcggtgccgacccggaggtcagcacctatcacgcctatgccggccggctgatcgcc
gactacggtctgctgctgcccgtcgaaccgtcgtcgacgctgctcaccgagaccgaactg
tggcagctcgccttctcactcgtgtcgtcgtggccgggggagctgaacaccaagaaggtt
cctgcgagcgtcaccgagtcggtcctcaagctgtacggcgagatgtccgaacacctcgtc
gacatcgacgatctcgccaaggccgggtcgcggctgtacgagctcatcgacaccctgccg
aagggtccgaagcagcgcgacaagccgacgcaggcgctgatgaaggtcaaggaggtcatc
gacgaacggcgcgaactgatcccgatggtcatcgccctcggcgagacgatgcgggcacag
tccgcactcgacttcggcagccagatgtcgctcgccgcaaagctcgtcgtgtccaacccg
gaggtcgtggccgccgagcggacggcgttccgtgcggtcctcctcgacgagtaccaggac
accggacactcacagcgcgtgctgctgtcgaccctcttcgggggccacgacccgtcgcgc
cagtcggtggccgtcacggcggtcggggacccgatccagtcgatctacggctggcgcgga
gcatcggcggccaacctcccgcggttcgcccgcgacttcccgcgacccgacggcacgccc
gccgaacgtcgcgaactcctcaccagctggcgcaacgcggctcagggcctccgcctggcc
aaccagatctcggaggaactgcggcgccgcggaatcccggtctccatcctgcgaccccgc
cccgacgccccacacggcaccgcgaccatcgccctcaccgagaccgttctcgacgaacgg
aactggatcgccgacgaggtcgagcggcgctaccgtgcggccgagaccgccggtgaggcg
ccgcccaccacagcgatcctggtgcggcgcaacgaggattccgccccactggccgccgag
ctggagagccgcggcatccccaccgaggtcgtcggcatcggcggactgttacacgtcccg
gagatcgaggacatcgttgcgaccctgcgcgtgatggccgacccgatggccggcaccgcc
gtcatgcgcctcctgaccggcgcccgctggcgcctcggcgcgaaagaccttgccgccctg
tggcgtcgcgccaccacactggcggccgagagctacgccgaggcgggcggcgtcgtcacc
agccgggaggaactcgacgccgcgctcgacgcggtgctgcccaccgagatcgtcgatcgc
gccggaatcgccgacgccgtcgtcgatccgggtgacccgagcgactacagcccggaggga
tacgcccgcatccgcgcgttcggtgcgcagctcgagtccctccgccgccgcatcgggcaa
ccgctgcccgaactcgtcgccgatgtggagaacacgatcggcgtgggggtcgaggcccag
atccgggcccggcggatgcgcggcgcgatcaccggtcgcgaacacctcgacgccttcgcc
gactacgtcagccactacgccgatcgtcccggcgcgaatctgcctgggctgctggcgttc
ctcgacgccgccgagtccatcgagaaaggtctcgaaccaggcaagatagaggtcgccgaa
cagcgcgtgcagatcctcaccgtgcacgcggcgaaggggctcgagtgggatgtcgtggcc
atcccgcatctcgcgaagggtatcttcccgagcgccaaggccgacaccacgtggctcggc
agcgcgcgcgagctccccgccgacctgcgcggcgacctcgcgatcccggccgagtcggcc
gacggcacgccggagggcttcccggtgttgaagatcgacaccgtcggcgaccgcaagcaa
ctcgaggacgccctgtccgaccacaaggcagcgatcagcgagcgacgcctggaggaggat
cggcgcctcctctacgtcgccctcacccgtgcacgacacgacctgctgatctccgcccac
cactggtcggagaccggtgacaagccgcgcggtggttcggatttcttcgacgagctgatg
gtcgccgtcgacgaggcgatcgccgatcccgccgtcgactcgaccgggttgtcggtcgcg
gtgcgcatcccgccgcccgccgaggacgccaccaacccgcttgccgaacgcgttgtggcg
cagccgtggccgcgtgatccgctcgccggccggcgcgacgcggtgcagtcggccgccgag
ctcgtcctggacgccatcacggcccgcgaggcacccgcgttgttcgcgacaccggacgcc
tcggacgatccggagatgctgccgatgccgcccgacccggaggacgaggtggcggcgtgg
gaagcggaggtgtcggccctgctggccgaacaccatcaggccaaccaggcgctcgtcgag
gtgacgctgccgacgcacctctcggtcagccagctcgtcgaactcgacgccgacgaggcc
gagttcgcccgccggctccgccgacccacacctttccggcccaacccgatggcgcggcgc
ggcaccgcattccacgcctgggtcgaacgctggttcggcgcgacccggctgctcgacatc
gacgaactgccgggcgccgccgacgcgaccgcgagtcccgacgccgatctcgacgcgttg
cgcgacgcattcctcgcctcgcgctgggccaaccgcagccccaccgaggtggaagtgccc
ttcgagaccgtgatcggcggcatcgtcgtgcggggccgtatcgacgcggtcttcgccgag
aaggacgggtcgtggacggtcgtcgactggaagaccggcgtcgtacccgaaccggcgaaa
cgggagtcgctgttcatccagttggccgcctaccggatcgcctgggcgcagctggccggc
gtgccggtggagaaggtgcacgccgccttccactacgtgcgcgacggacacaccctggag
gccgacgacctgcccgacgaggcgaccctcgccgccaagctggccaaatga
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