Gordonia rubripertincta: GCWB2_22530
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Entry
GCWB2_22530 CDS
T05629
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gru
Gordonia rubripertincta
Pathway
gru03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GCWB2_22530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gru03400
]
GCWB2_22530
Enzymes [BR:
gru01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GCWB2_22530
DNA repair and recombination proteins [BR:
gru03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GCWB2_22530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ASR05277
LinkDB
All DBs
Position
4926733..4929216
Genome browser
AA seq
827 aa
AA seq
DB search
MAGGENLEVDGRRISITNLSKVLYPATGTRKYDVIDYYSRIADVMLPHLRDRIVTRKRWP
NGVESTPFFEKDMPDSAPDWVRRYGIQHSERVIEYALAEDRATLVWLAQMAALEIHVPQW
RLPIGPDGERMANRIVFDLDPGPRVPLHETAAVAVEIRNWLGGTTTYPVTSGGKGIHIYA
RLPKPVSSEAARKVAREVANEFARQNSDFITANMSKKIRDDKVFIDWSQNNASKTTLSPY
SLRGREQPWVAAPRTWDEIEDPKIAQLLYTEVLDRVADVGDLLEGLDAPYDDDPATDAGH
DTDQADTEDSDGDIIDPDTLRENITSGDGPAPDDRPTEESQPGQIINLREYRRKRDESKT
PEPFGDENHRQRLRESDEEAGTAPETGPREPIFVIQEHHARRLHYDFRLEHDGVLVSWAV
PKNLPTDPDQNRLAVQTEDHPMDYADFEGDIPAGEYGGGHVSIWDKGTFELEKWRDKEVI
VRLHGEKVQGRYALIRTGDKNWLAHLMTDEPRPIVPDSLSDPRPMLATDDPIDKLNERDW
AFEGKWDGYRLLVRSIGGEFRLTSRSGIDMTKDFPEFAGIADDLGLMDVVLDGEAVAIDS
TGRTNFTLFTSRKHTEEPYTLKLHLFDILYLNGTSLLRKPWSVRRELLEELAPAFRRSPY
VDVPPLLPTPAHAAIEYSREHNLEGVVAKRRDSVYQQGRRSTKWLKHKNWSDIEVVVGGY
RPGRGNRSHTIGSLLLGLPEETGLRYVGRVGTGFTDAQLRSLAEELEPLEISRSPFLDKL
DRPIASSAVWVLPKIVGEVRFMDWTTAGHLRHPSWRGIRRDKFPGDL
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcggagagaacctcgaggtcgacggccgccggatctcgatcaccaatctctcc
aaggtgctctatccggcgaccgggacccggaagtacgacgtcatcgactactactcgcgc
atcgccgacgtcatgctgccgcatctgcgcgatcggatcgtcacccgcaaacgctggccc
aacggtgtcgagtcgacgccgttcttcgagaaggacatgcccgacagcgcacccgactgg
gttcgtcggtacggaatccagcacagcgagcgggtcatcgaatacgcgctggccgaggat
cgcgccacgctcgtgtggctggcccagatggcggcgctcgagatccacgtcccgcaatgg
cgactgccgatcggtcccgacggtgaacgtatggccaaccgcatcgtcttcgatctcgac
cccggcccgcgtgtccccctgcacgagaccgcggccgtggcggtggagatccggaactgg
ctgggcggcaccaccacctacccggtgaccagcggcggcaagggcatccacatctacgcc
cgactgcccaaaccggtgagctccgaggcggcacggaaggtcgcgcgcgaggtggccaac
gagttcgcccggcagaacagcgatttcatcaccgccaacatgtccaagaagatccgcgac
gacaaggtcttcatcgactggagccagaacaacgcctccaagaccactctgtcgccgtac
tcgttgcgcggacgcgaacaaccgtgggtcgccgctccccgcacctgggacgagatcgag
gacccgaagatcgcccagttgctctacaccgaggtcctcgaccgcgtcgccgacgtcggc
gatctcctcgaggggctcgacgccccgtacgacgatgatccggccaccgacgccggtcac
gacaccgaccaggccgacacggaagacagcgacggggacatcatcgacccggacacgttg
cgggagaacatcacctccggtgacggtcccgctcccgacgatcgccccaccgaggagtcg
cagccgggtcagatcatcaatctccgggagtaccgccgcaagcgggatgagtccaagacc
ccggagcccttcggcgacgagaaccaccggcagcgcctccgtgaatccgacgaggaggcc
ggcaccgcccccgaaaccggtcctcgcgaaccgatcttcgtcatccaggaacaccacgcg
cggcgcctccactacgacttccgcctcgaacacgacggggtgctggtctcgtgggccgtc
ccgaagaacctgcccaccgatccggaccagaaccggctcgcggtccagaccgaggaccat
ccgatggactatgccgacttcgagggcgacatcccggccggggagtacggtggcgggcac
gtatcgatttgggacaagggcactttcgagctggagaagtggcgggacaaagaggtcatc
gtccgcctgcacggtgagaaggtccagggtcggtacgcactgatacgcaccggcgacaag
aactggctcgcccacctgatgaccgacgagccgcgccccatcgtccccgacagtctcagc
gatccgcggccgatgctcgcgaccgatgacccgatcgacaagctgaacgaacgggactgg
gcgttcgagggcaagtgggatgggtatcggctcctggtgcggtcgatcggtggcgagttc
cggctcacgtcccggtcggggatcgacatgacgaaggacttccccgaattcgcgggcatc
gccgacgatctcgggctgatggacgtcgtcctcgacggcgaggcggtcgccatcgactcg
accggccggacgaacttcacgctgttcacgtcacggaaacacaccgaagagccgtacacg
ctcaagctgcacctgttcgacatcctctacctcaacgggacgtcgttgctccggaaaccg
tggtccgtgcgacgcgaactactcgaggaactcgcgcccgccttccgccggtcgccgtat
gtcgatgtgccgccgctgcttccgacgccggcgcatgcggcgatcgagtacagccgcgaa
cacaacctggaaggcgtcgtcgccaaacgacgcgactcggtgtaccagcagggtcgacgc
tccaccaagtggctcaagcacaagaactggagcgacatcgaggtggtggtcggcggttac
cggcccgggcgcggcaaccgctcgcacaccatcggatcgctgttgctcgggctgcccgag
gagaccgggctccgctacgtgggacgcgtcggcaccggcttcaccgatgcgcaattgcgc
tcgctcgccgaggaactcgagccgctggagatctcccggtcgccgttcctggacaagctc
gaccgccccatcgcgtcgagcgcggtctgggtgctgcccaagatcgtcggcgaggtgcgc
ttcatggactggaccaccgcgggccaccttcgacacccgagctggcgcggcatccgccgg
gacaaattccccggagatctctga
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