Granulicella sp. WH15: FTO74_02760
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Entry
FTO74_02760 CDS
T06415
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
grw
Granulicella sp. WH15
Pathway
grw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
grw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FTO74_02760 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
grw03021
]
FTO74_02760 (rpoC)
03400 DNA repair and recombination proteins [BR:
grw03400
]
FTO74_02760 (rpoC)
Enzymes [BR:
grw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FTO74_02760 (rpoC)
Transcription machinery [BR:
grw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FTO74_02760 (rpoC)
DNA repair and recombination proteins [BR:
grw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FTO74_02760 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Biotin_lipoyl_2
Apocytochr_F_C
DUF7489
Motif
Other DBs
NCBI-ProteinID:
QHN02411
LinkDB
All DBs
Position
620271..624461
Genome browser
AA seq
1396 aa
AA seq
DB search
MFRSSPFELTGPIADFDAIKIQLASPEKIRSWSHGEVTKPETINYRTFKPERDGLFCARI
FGPVTDWECLCGKYKRMKHRGVICDKCGVEVTLSKVRRERLGHIELASPCSHVWFFKGLP
SRIGHLLDISLRELEAVLYFESYVVVDPGDAPVKEREVIKDENRFRELDQQYRPSGFKAM
MGAEAIKELLKRVEILELSIELRERMKTETSLQKKLKYSKRLKIVEAFRKSDNLPQWMIL
DVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKKLMDLHAPEVIVRNEKRML
QEAVDALFDNGRRGRVLRGANNRPLKSLSDTLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYHRLEQTGHCTTIKQAKEMVEMQEPIVWDILEEVIKDH
PVLLNRAPTLHRLGIQAFEPVLVEGKAIKIHPLVCTAFNADFDGDQMAVHIPLSPEAQIE
ASVLMLAAHNILSPASGQPITVPTQDLVLGLYYLTKAKVNAKGEGRVFANIEEVFMALEA
QQVETLSPIRLRYTGKVLDMTTAYDDQDLVHTEAVEYNNQFISTTVGRAILNDSLPEGMP
FVNGLLKKKGIGQLINYCYLNLGLEVTVKTLDRVKDLGFRYATRSGLSVGLDDMVIPDSK
YTLVGDAEKTVLTMQQQYLDGAITNGERSNKVIQMWSGVTERVADEMFNNMKRADKEGAM
NPIYIMADSGARGSKQQIRQLSGMRGLMAKPSGEIIETPITANFREGLTVLQYFISTHGA
RKGLADTALKTADSGYLTRRLVDVAQDVIISHVDCGTVDGIYVTPIIEAGETIEPLRDRI
IGRVSLEKLKDFEGKTIVEVNQEIDEDLASAIQAAGIEKVKIRSVLTCESKRGVCILCYG
RNLGSGKMVEMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTASRVSDASHLEAKNAGSIRF
INLVTVRSKDGGLVAFNRNGSIAVIDDKGREKERYAIVYGAKLKVEEGQQVAQGQVIGEW
DPYTFSLLTEIAGTVQFKDLQEGVTLNEEVDEVTGLSRLVVADSPDEKRQPAIIIKGVNG
NKRYLMPSRAHLMLQDGDEVFPGDILAKIPRETTRTKDITGGLPRVVELFEARKPRDPAI
ISKIDGVVRFGDVSKGQRKVYVTADNGQEEEYSVPRGVYVNVQEGERLRAGDALIDGPRN
PHDILEVLGERALQMYLVNEIQEVYRLQGVTISDKHIETIVRQMLRWVKIEEVGDTSFLV
DEQTDRFRFNGENQRVLMTGGKPAIGRSLLLGITKASLSTDSFISAASFQETTRVLTEAS
ISGKIDTLRGLKENVIVGRLIPAGTGMEYYRNVQLSPELEEAAAQVQQEVTAAIEAEERE
LEQMRMEGEQEEMAAE
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgctccagcccctttgaactgaccggccccatcgccgacttcgacgccattaag
attcagctcgccagcccggagaagatccgtagctggtcgcatggcgaggtcaccaagccc
gagaccatcaactaccgcacgttcaagcccgagcgtgacggcctcttctgcgcgcgcatc
ttcggacccgtcaccgactgggagtgcctgtgcggcaagtacaagcgcatgaagcaccgc
ggcgtcatctgcgacaagtgcggcgtcgaggtcaccctctcgaaggtccggcgcgagcgc
ctcggccacatcgagctggcctcgccctgctcgcacgtctggttcttcaagggcctgccg
tcgcgcatcggccaccttctcgacatctcgctgcgcgagcttgaggccgtcctctacttc
gagtcctacgtcgtcgtcgatccgggcgacgcgccggtcaaggagcgcgaggtcatcaag
gacgagaaccgcttccgcgagctcgaccagcagtaccgcccctccggcttcaaggccatg
atgggcgcagaggccatcaaggagctgctcaagcgcgtcgagatcctcgagcttagcatc
gagcttcgggaaagaatgaagaccgagacctcgctccagaagaagctcaagtactccaag
cgtctgaagatcgtcgaggccttccgcaagtccgacaacctgccgcagtggatgatcctc
gacgtgatccccgtgatcccgcccgaactgcgtccgctggttccgctcgatggcggccgc
ttcgccacgtcggacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctc
aagaagctgatggacctgcacgctcccgaggtcatcgtccgcaacgaaaagcgcatgttg
caggaggccgtcgacgcgctcttcgacaacggccgccgtggccgcgtgctgcgtggcgcg
aacaaccgtccgctgaagtcgctctccgacaccctcaagggcaagcagggccgcttccgt
cagaacctgctcggcaagcgcgtcgactactccggccgttcggtcatcgtcgtcggcccc
gagctgaagctgcaccagtgcggtctgcccaagaagatggcgcttgagctgttcaagccc
ttcatctatcaccgcctcgagcagaccggccactgcaccaccatcaagcaggccaaggag
atggtggagatgcaggagcccatcgtctgggacatcctcgaagaggtcatcaaggatcac
ccggtcctgctgaaccgcgctccgaccctccaccgtctgggtatccaggcgtttgagccg
gtgctcgtcgaaggcaaggccatcaagatccatccgctcgtctgcacggcgttcaacgcc
gacttcgacggcgaccagatggctgtacacatcccgctctcgcccgaggctcagatcgag
gcttcggtcctgatgctggccgcgcacaacatcctctcgcccgcctcaggacagcccatc
acggtgcccacgcaggacctcgtcctcggcctctactacctcaccaaggccaaggtgaac
gccaagggtgaaggccgcgtcttcgcgaacatcgaagaggtcttcatggcgctcgaggcc
cagcaggtcgagacgctctcgccgatccgcctgcgctacactggcaaggtgctcgacatg
accaccgcgtacgacgatcaggatctcgtccacaccgaggccgtcgagtacaacaaccag
ttcatctcgaccaccgtcggccgcgccatcctcaacgactcgctgccggagggaatgccc
ttcgtcaacggtctgctgaagaagaagggaatcgggcagctcatcaactactgctacctg
aacctcggactcgaagtgaccgtcaagaccctcgaccgcgtcaaggatctcggcttccgc
tatgccacgcgctccggtctctcggtcgggctcgacgacatggtcatcccggattcgaag
tacacgctggttggcgacgccgaaaagaccgtcctcaccatgcagcagcagtacctcgac
ggagccatcaccaacggcgagcgttcgaacaaggtcatccagatgtggtcgggagtcacc
gagcgcgtcgccgatgagatgttcaacaacatgaagcgcgccgacaaggaaggagccatg
aacccgatctacatcatggccgactccggtgctcgtggttcgaagcagcagatccgtcag
ctctccggtatgcgcggtctgatggccaagccctcgggcgagatcatcgagacccccatt
acggcgaacttccgtgaaggtctcaccgtgctccagtacttcatctccacgcacggagcc
cgtaagggtctggccgacacggcgctcaagaccgcggactcgggttacctcacccgccgt
ctggtcgacgtggcccaggacgtcatcatctcgcacgtcgattgcggcacggtcgacggc
atctacgtcaccccgatcatcgaagccggtgagaccatcgagccgctgcgcgaccgcatc
atcggccgcgtctcgctcgagaagctcaaggacttcgagggcaagaccatcgtcgaagtg
aaccaggagatcgacgaagatctcgcctcggccatccaggccgcgggtatcgagaaggtg
aagatccggtctgttctgacgtgcgaatcgaagcggggagtatgcatcctctgctacggc
cgtaacctcggctcgggcaagatggttgagatgggcgaggccgtcggtgtcatcgcggcg
cagtccatcggcgagccgggaacccagctcaccatgcgtaccttccacatcggcggaacc
gcttcgcgcgtctccgatgcgtcgcacctcgaggccaagaacgcgggttcgatccgcttc
atcaacctcgtcacggtgcgctcgaaggacggcggcctggtggccttcaaccgtaatggt
tctatcgccgtcatcgacgacaagggccgcgagaaggagcgttacgcgatcgtctacggc
gccaagctgaaggtcgaagagggccagcaggttgcacagggacaggtcatcggcgagtgg
gacccttacaccttctcgctcctcaccgagatcgccggaacggtccagttcaaggacctt
caggaaggcgtcacgctcaacgaagaggtcgacgaagtcaccggcctctcgcgtctggtc
gtcgccgactctcccgatgagaagcgtcagcccgccatcatcatcaagggcgtcaacggc
aacaagcgttacctgatgccgtcgcgtgctcaccttatgttgcaggacggcgacgaggtc
ttccccggcgatatcctcgcgaagatcccgcgtgagaccacccgtaccaaggacatcacc
ggaggtctgccgcgcgtcgttgagctgttcgaagcgcgtaagcctcgcgatcccgcgatc
atctcgaagatcgacggtgtcgtccgcttcggcgatgtgtccaagggccagcgcaaggtc
tacgtcacggccgacaacgggcaggaggaagagtactcggtgccgcgtggtgtgtacgtc
aacgtccaggaaggcgagcgtctgcgtgcaggcgacgccctcatcgacggaccgcgcaac
ccgcacgacatcctcgaggtgctcggcgagcgtgctctgcagatgtatctcgtgaacgaa
atccaggaggtctaccgcttgcagggtgtgaccatctcggacaagcacatcgagaccatc
gttcggcagatgctgcgctgggtcaagatcgaagaggtgggcgatacgtccttcctcgtc
gacgagcagaccgatcgcttccgcttcaacggcgagaaccagcgtgttctgatgacgggc
ggcaagcctgccatcgggcgttcgcttcttctcggtatcacgaaggcgtcgctctcgacc
gacagcttcatctcggccgccagcttccaggagaccacccgcgtcctcaccgaagcctcg
atcagcggcaagatcgacacgctgcgcggcctcaaggagaacgtcatcgtcggtcgcctc
atccctgccggaaccggcatggagtactaccgcaacgtgcagttgtcgcccgaactcgag
gaggcagccgcccaggtccagcaggaggtcacggcagccatcgaagccgaggagcgagag
ctggagcagatgcggatggaaggcgaacaagaagaaatggccgccgaatag
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integrated database retrieval system
