Granulicella sp. WH15: FTO74_18145
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Entry
FTO74_18145 CDS
T06415
Name
(GenBank) RNB domain-containing ribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
grw
Granulicella sp. WH15
Pathway
grw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
grw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FTO74_18145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
grw03019
]
FTO74_18145
03016 Transfer RNA biogenesis [BR:
grw03016
]
FTO74_18145
Enzymes [BR:
grw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FTO74_18145
Messenger RNA biogenesis [BR:
grw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FTO74_18145
Transfer RNA biogenesis [BR:
grw03016
]
Prokaryotic type
tRNA degradation factors
FTO74_18145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Rho_RNA_bind
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
QHN05060
UniProt:
A0A7L5AF55
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All DBs
Position
4394291..4396984
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AA seq
897 aa
AA seq
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MIERSAGHRAGYKQLIRELGLGGGRERRLLLEQLARITVRGELVKIDDDQWALPRATPDK
TARVSRAPGMPVEHKATREGLVAGRLDLHRDGFGFVRPNGSSSRAEDIFIPPNELNGAMQ
GDEVLVDEAPLDREGRRSGRIARVLNRRNPTVVGIFHYARPQGRRGTSGYDTGLLTGNYI
TPLDERMTQPILIPDGPGGVVLLPAENPHRVLGEEALKQLGERTGDSSGNKLDPLEGLAV
DVEITDFPGVNRPAKGRIIEVLGHPDDFGVDVEIIIRKHHLPYTFPDNVLAEATASASQT
VATLTDEEVARRHDFRGLPIVTIDGETARDFDDAVLVRQLPNGNWQLQVHIADVSHYVRP
GTALDLEARLRATSVYFPDRAVPMLPPQLSSGMCSLRPDEDRLVLSCIAEIDAAGEVAEF
ELCEGIIRSARRMTYTQVQKILDGDAETRAAFIELVPAFEQMYELALKLNRKRHRRGSID
FDLPEPVIRFDPQGNMAAITRSERGWSNRLIEEFMLTANECVAHWLELRGPSIYRIHEMP
DPKRIIDFEETASGFGYSLGFSTLPVKRMTMKSDRRSSRAGAERHGGRARQVQTHDVPEE
IPVTPQMYQRLTAKIAGTPEERILAYLMLRSLKQARYSEKNEGHFALASPSYTHFTSPIR
RYPDLIVHRLLRAALEAGVSPMGGPILSSDPQPWAARKAGKHAERPAPTGEPLPNWLPPQ
ELQDIAAESSQAERRADDAERELMEWKKIKFMQDRVGEDFQATVLSCTKYGFFVELDELF
IEGLVPIATLGSRGRFGDDERYSFRDTDRTIVGDFSGRVFKIGQRVHVLLDRIDRQQKRL
QFALVPGEEPQGESPKSLRKPKTARVENHSSPTRTGKPGKTKSKTRARVKKAKGKRR
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaacgctcggccgggcacagggccgggtacaaacaactgatccgcgagctgggg
ctgggcggcgggcgcgagcgcaggctgctgctcgagcagctggcgcgcatcaccgtgcgg
ggcgagctggtcaagatcgacgacgaccagtgggcgctgccgcgggccactccggataag
accgcgagagtttcgcgcgcgccggggatgccggtggagcacaaggccacgcgcgagggc
ctggtggccggacggctggacctgcaccgcgacggcttcggctttgtaaggccgaacggc
agcagcagccgcgcggaagacatcttcatcccgccgaacgagctgaacggagccatgcag
ggcgacgaagtgctggtggacgaggctccgctcgaccgcgagggacgccgctccgggcgc
atcgcacgggtgctcaatcggcgtaatcctaccgtggtggggatcttccactacgcgcgt
ccgcagggtaggcgcggcaccagcggctacgacaccgggctgctgacgggcaactacatt
accccgctcgacgagcgcatgacgcagccgatcctgatccccgacggaccgggcggcgtg
gtgctgctgcctgccgagaacccgcaccgggtgctgggcgaagaggctctgaagcagctt
ggtgagcgcactggagattcttcagggaacaagctggacccgctcgaaggtttggccgtc
gatgtcgagatcaccgacttccccggcgtgaaccgtccggccaaggggcggatcatcgag
gtgctggggcacccggacgacttcggcgtggacgtcgagatcatcatccgcaaacaccac
ctgccgtatacgtttcccgacaacgtgctcgccgaagcgacggcctcagccagccagacc
gtggccacgctgaccgacgaggaggtggcgcggcggcacgacttccgtgggctgcccatc
gtcaccatcgacggcgagaccgcgcgcgacttcgacgacgccgtgctggtgcggcagctt
cccaacggcaattggcagttgcaagtccacatcgccgacgtgagccactacgtgcgcccc
ggtacggcgctcgacctcgaggcccgcctgcgcgccaccagcgtctacttccccgaccgc
gccgtgcccatgctgccgccgcagctttcgtcgggcatgtgttctctacggcccgatgag
gaccggctggtcctgagctgtatcgccgagatcgacgcggcgggtgaggtcgccgagttc
gagctgtgcgagggcattatccgctcggcgcggcgcatgacctacacgcaggtacagaag
atcctcgacggcgacgccgagacccgcgccgccttcatcgagctggtgcccgccttcgag
cagatgtacgagctggcgctgaagctgaaccgcaagcgccatcgccgcggctccatcgac
ttcgacctgcccgagccggtgatccggttcgacccgcagggcaacatggcggcgatcacg
cggtcggagcgcggctggtcgaaccggctcatcgaggagttcatgctgacggccaacgag
tgcgtggcgcactggctggagctgcgcgggccgtcgatctaccgcatccacgagatgccc
gaccccaagcggatcatcgacttcgaggagacggccagcggcttcggctactcgctcggc
ttctcgacgctgccagtcaagcggatgaccatgaagtccgatcggcgcagctcccgcgcc
ggggcggagcggcacggaggccgcgcccgccaggtgcagacgcacgatgttcccgaggag
attccggtgacgccgcagatgtaccagcggctgacggcgaagatcgcgggcacgcccgag
gagcgcatcctcgcctacctgatgctgcgttcgctgaagcaggcgcgctacagcgagaag
aacgaaggccacttcgcgctggccagcccgagctatacgcacttcaccagccccatccgg
cgctatccggacctgatcgtgcaccggctgctgcgcgccgcgctcgaggccggagtaagc
ccgatgggcgggccgattctttcgagcgatccgcagccgtgggcggcgcgcaaggcgggc
aagcacgcggagaggcccgcgccgacgggcgagccgctgccgaactggctgcccccgcag
gagcttcaggatatcgccgccgagtcctcccaggccgagcgccgcgccgacgacgccgag
cgcgagctgatggagtggaagaagatcaagttcatgcaggaccgcgtgggcgaagacttc
caggccaccgtgctctcgtgcaccaagtacggattcttcgtggagctggacgagctgttt
atcgagggcctcgtgcccatcgccacgctgggttctcgcgggcgcttcggcgacgacgaa
cgctacagcttccgcgacaccgaccgcactatcgtcggcgacttctccgggcgcgtcttc
aagatcggccagcgagtgcatgtgctgctcgaccgcatcgaccggcagcagaagcggttg
cagtttgcgctggtaccgggcgaggaaccgcagggcgagtctccgaagagcctgcgcaag
cccaaaacggcgcgggtcgagaaccactccagcccgacgcggacgggcaagccgggcaag
accaagtcgaagacgcgggcgcgggtgaagaaggccaagggcaagcggcgttag
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