Gemella sanguinis: FOC50_06925
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Entry
FOC50_06925 CDS
T06314
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gsa
Gemella sanguinis
Pathway
gsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOC50_06925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsa03019
]
FOC50_06925
Messenger RNA biogenesis [BR:
gsa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FOC50_06925
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QGS08011
UniProt:
A0ABX6FHX9
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All DBs
Position
1453734..1455629
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AA seq
631 aa
AA seq
DB search
MDNNNNISIAKNLQSSKRKNTQAKQRNNKKIDKSKNTKVVAKKKANERVITKQSEIKNIK
SNKKDSNLLINFKENRSKKNIAKIRITPLGGVEEVAKNMYMVEIADEIFVLDAGLMFPET
EMIGIDAVIPDISYLVRNKQKVKGIFLSNGHVSSMGAIPYIIDKLKCPVYGSKLTIDLLK
NHLKHLGIKRRIKFYYVKENNKYEFNNANVTFFKTTYSMPDSLGICIETSQGNIVYTGEF
KFDQSVSKEYKSDIVKISTLGQKGVLALLSDSSNANVKGYNVPENEAAEQIDNAFYKANK
RIIVTCYASNFLTISHIVKAALTQNRKILLLGEAIQDSINTARDMKYLNIEDENLISIEN
LKDYPQNEICILSSGDQGEPIEAMKNMAEKKIKGIQIDEGDTIMIAATPSPNMEVMLFQT
LNLLVKLGAHVVTASKRLHAASHATREELKMMLNMLMPKHFIPVQGEFRNLRKHAEIAEE
TGVSKENIHILQKGTTLEISGNKTKTIPNNVPIGNILVDGRGIGDVEDSVLKDRKVLSND
GIFVTSYAISRKEKTLVGRPCIQTKGFVYVKKSTELIKEAEEKVIDYLENNPIKNIRECA
AVKAEIRNMLASLLYDNTKRKPIIIVNFSLV
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggacaataacaataatattagtattgcaaagaatctgcaatctagtaagagaaaaaat
actcaagctaagcaacgaaataataaaaaaatagataagagtaaaaatacaaaagtagtt
gctaagaaaaaagctaatgagagagtaattactaaacagtctgaaataaaaaatataaaa
agtaataaaaaagattcaaacctattgataaattttaaagaaaatagaagtaaaaaaaat
atagcaaaaattcgtattacaccattaggtggtgttgaagaagttgcaaaaaacatgtat
atggttgaaatagctgatgaaatatttgttttagatgctggtctaatgttccctgagacg
gagatgatcggtattgacgccgtaattcctgatataagttaccttgtgcgtaacaaacaa
aaagtaaaaggtatttttctatcaaatggacatgttagttctatgggggcaataccttat
ataattgataaattaaaatgtcctgtttatggttcaaaactaactattgacttattaaaa
aatcatttaaaacatttaggaataaaacgtagaattaagttctactatgtaaaagaaaat
aacaagtatgaatttaataatgctaatgttacatttttcaaaactacatattcgatgccc
gattcgttaggaatatgtattgaaactagtcaagggaatattgtttacacaggtgaattt
aaattcgatcaatcagtaagtaaagaatacaaatcagatattgttaaaataagtacgttg
ggacaaaaaggtgttttagcattattgagtgattctagtaatgcaaatgttaaagggtac
aatgtaccagaaaatgaagctgcggaacaaatagataatgctttttataaagctaataag
cgtataatagtaacatgttatgcatcaaacttcttaactatttctcatatagtgaaagct
gcattaacacaaaatagaaaaattctattattaggtgaagcaattcaagattctatcaac
actgcaagagatatgaaatatttaaatatagaagatgagaatttaataagtattgaaaac
ttgaaagactatcctcaaaatgaaatttgtattttatcgtctggggatcagggtgagccg
attgaagcaatgaaaaatatggctgagaaaaaaattaaaggtattcaaatagatgaaggg
gatactattatgatcgcagcaactccatcacctaatatggaggtaatgttattccaaaca
ctaaatctattggtgaaattaggtgctcatgttgtcacggcttctaagagacttcatgct
gcgagtcatgctactcgtgaagagttgaagatgatgttaaatatgcttatgcctaagcac
tttatacctgttcaaggtgagtttagaaatctaagaaaacatgcagagattgctgaggag
acaggagtttctaaagaaaatatccatatactgcaaaaaggaacaactttagaaataagt
ggtaataaaacaaaaactatccctaataatgtacctatagggaacatacttgttgatggt
cgaggaattggagatgtagaggatagtgttctaaaagatagaaaagtactatcaaatgat
ggaatatttgttacctcatatgctataagtagaaaagaaaaaacattagtaggaagacca
tgtattcaaacaaaaggttttgtatatgttaagaaaagtacagagcttataaaagaagct
gaagaaaaagttattgattatctagaaaataatccaattaaaaatataagagagtgtgct
gcagtaaaagcagaaattagaaatatgttagcaagcttattatatgataatacaaagaga
aaacctattattattgttaacttttcattagtttaa
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