Gemella sanguinis: FOC50_08240
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Entry
FOC50_08240 CDS
T06314
Name
(GenBank) AAA family ATPase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
gsa
Gemella sanguinis
Pathway
gsa03420
Nucleotide excision repair
gsa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gsa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FOC50_08240
03430 Mismatch repair
FOC50_08240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsa03400
]
FOC50_08240
Enzymes [BR:
gsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FOC50_08240
DNA repair and recombination proteins [BR:
gsa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FOC50_08240
MMR (mismatch excision repair)
Other MMR factors
FOC50_08240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_11
PcrA_UvrD_tudor
AAA_12
CarD_TRCF_RID
DEAD
DUF643
Motif
Other DBs
NCBI-ProteinID:
QGS08254
LinkDB
All DBs
Position
1729821..1732007
Genome browser
AA seq
728 aa
AA seq
DB search
MNLVQNMNENQLKAILKTEGAVMVIAGAGSGKTRVLTNRIAYLISEKNVLESNILAITFT
NKAAKEMKERIYSLVGETSKYIWINTFHSMCVRILRQNIELLGYNKNFTILDVSEQKSII
KNILKELNLSEDSYQPNNILKIISKAKNNMTSVSDMRSQSRFGFMKNVSEIYGHYQNYLK
KNSVLDFDDLMLKTIVLFEKHPEVLSIYQNKFQYIHVDEYQDTNVIQYKLIKMLSAVHKN
VCVVGDDDQSIYSWRGACSDNIINFEKDYDNVELIFLDQNYRSNSTILDAANAVIKNNTE
RKEKALWSENKSNRKISIYGALNDKDETDDIARKILELNKEGIKFRDMAILYRANFLSRS
MENSCLSFGIPYKLIGSLKFLQRQEVRDLLAYLNVIVNRADEFSLRRIINVPKRGIGATS
MEKIDKYANEYGLSLFEALENIDMIGVSKKITTNVHLLTNLIKKYSNTENYSIDELIIGI
YKDSGYENMLKESSDPYAESRIENISELVSSAKQFSSMNDSLIDFISEMSLTSDADDENI
EDAVVLSTVHAAKGLEYDVVFIMGLEESLFPSIRDADSSEDERNKMEEERRLAYVAITRA
KERLFMSFANRRMQFGSIKMNRKSRFIDEVPKELTHFESSFGSTPSDNKDSNIEQANKFI
SNLSPKINITKKAKLSNDMNYSTGDIVLHKKFGEGKVLDIKTDSVKVEFDEVGVKILLIE
YANLTRKD
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
gtgaatttagtacaaaatatgaatgaaaatcaattaaaggctatactaaaaactgagggt
gctgttatggtaatagcaggagctggaagtggaaaaacacgtgttctgacaaataggata
gcatacttaatttctgaaaaaaatgttttagaaagtaatatattagcaataacatttacc
aataaggcagcaaaagaaatgaaagagagaatttatagtcttgttggagaaacctcaaag
tatatttggattaatactttccattcaatgtgtgtaagaattttaagacaaaatatagaa
ttacttggatacaataaaaatttcacaatattagatgttagtgagcaaaaatcaattatt
aaaaatatcctaaaagagttaaatctatcagaagattcatatcaaccaaataatatatta
aaaatcatatcaaaagcaaaaaataatatgacaagtgttagcgatatgcgcagtcagtct
agatttggttttatgaaaaatgtgtctgaaatttatggacattaccaaaactatttaaag
aaaaatagtgtattagattttgatgatttaatgctaaaaacaatagtcctttttgaaaaa
catcctgaagtactaagtatatatcaaaataaattccagtatattcatgttgatgagtat
caggacactaatgttatacaatataaacttataaaaatgttatcagcggtacacaaaaat
gtttgtgtagttggcgatgatgatcaaagtatttatagctggcgtggagcttgtagcgat
aatattataaactttgaaaaagattatgataatgttgaattaatattcttagatcaaaat
tatcgttctaattcaactattttagatgccgctaatgcagtgataaaaaataatactgag
agaaaagaaaaagcattgtggtcagaaaataaaagtaatagaaaaatatctatttacggt
gctttaaatgataaagatgaaacagatgatatagctagaaaaatattagaattaaataaa
gaaggcataaaatttagagatatggcaattttatatcgagctaactttttatcgcgttca
atggagaattcatgtttatcgttcggtataccatataagcttatagggtcattaaaattc
ttacaacgtcaagaagtacgtgacttattagcatatttaaatgttatagtcaatagagct
gatgaatttagtttaagaagaataattaatgttcccaaaagaggaattggggcaacctca
atggaaaaaatagataagtatgctaatgaatatggactatcattatttgaagcactagaa
aatattgatatgattggagtttctaaaaagataacgactaatgttcatttattaactaac
ttaataaaaaaatattctaatactgaaaattattcaattgatgaactaataattggaatt
tataaggattcaggttatgaaaatatgcttaaagaatcatcagatccttatgcagaaagt
agaattgaaaatatatcagaattggtttcatctgcgaagcagttttcaagtatgaatgat
agcttaatagattttatatcagaaatgtcactgacttctgatgctgatgatgaaaatatt
gaggatgctgtagttttatcaactgtacatgcagctaaaggacttgaatatgatgtagta
tttataatgggacttgaagaaagtttattcccttctataagagatgcagatagtagtgaa
gatgaaagaaataaaatggaggaagaacgtcgattagcatatgttgcaataacaagagct
aaggaaagattatttatgtcttttgcaaacagacgtatgcaatttggttcaataaaaatg
aatagaaaatcacgatttatagatgaagtaccaaaggaacttactcattttgagtcttct
tttggctcaactccatcagataataaagattcaaatattgaacaagcaaataaatttata
agtaatcttagtccaaaaattaatattactaaaaaagctaaactatcaaatgacatgaat
tatagcactggtgatatagtattacataagaagtttggtgaaggaaaagtattagacata
aaaactgatagtgtaaaagtagaatttgatgaagttggtgttaagatactgcttatagaa
tatgctaatttgactagaaaggactag
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