Geoalkalibacter subterraneus: GSUB_04545
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Entry
GSUB_04545 CDS
T03585
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gsb
Geoalkalibacter subterraneus
Pathway
gsb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gsb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSUB_04545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsb03019
]
GSUB_04545
03400 DNA repair and recombination proteins [BR:
gsb03400
]
GSUB_04545
Enzymes [BR:
gsb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GSUB_04545
Messenger RNA biogenesis [BR:
gsb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GSUB_04545
DNA repair and recombination proteins [BR:
gsb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GSUB_04545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AJF05976
UniProt:
A0A0B5FQV7
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All DBs
Position
1018121..1019971
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AA seq
616 aa
AA seq
DB search
MSVPDSPLDTLRSVFGFREFKSRQREIVDTLLAGEDAFVLMPTGGGKSLCYQIPALLRGG
TAIVVSPLISLMKDQVDALQANGVQAAFYNSSQSADDARRVLARLHAGELRLLYVAPERL
MSDAFQDRLRDLDISLFAIDEAHCVSQWGHDFRPEYVRLGELRSRFPQVPMVALTATADP
QTRNDIAQRLKLERARIFVAGFDRPNIRYTITEKAKPFQQLMTFLGSRHNQAGIVYALSR
KRTEQVAHRLREQGIDAAPYHAGLGEEERRRVQEAFQRDDLRVVVATVAFGMGIDKPNVR
FVVHYDLPKNIESYYQETGRAGRDGLPSEALLLFGPGDVAQARALIEKNQNPNQRRIELH
KLNTMVGLCEAQICRRRVLLGYFGDELNEDCGNCDLCLDPPERFDATVPAQKALSCVFRV
GQRFGVGHVVDVLRGADNERIRRLGHERLSTYGIGADLGVDEWNSLLRHLVHLGYLTQDA
AQYSVLKLTEKARPILRGEEKLVLPRPRTRVETPRKVKRKGREDLDYDAELFEALRRLRK
ELADAAAVPPFVVFSDATLAEMAAFIPRDRDALLSINGVGQAKLKRYGEEFLRVLRNHGQ
GEDAAEDNSILLVEHE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtacctgattcgccgctggataccctgcggtctgtctttggttttcgagagttc
aaaagtcgccagcgcgagattgtcgatacgctgctcgccggggaggacgcctttgtcctg
atgcccaccggcggtggcaagtcgttgtgctaccagattccggcgcttcttcgcgggggc
accgcgattgtcgtttcgccgctgatttccctgatgaaggatcaggtggatgctctgcag
gccaatggcgtgcaggctgccttttacaattcttcacagagcgccgatgatgcgcgtcgc
gttcttgcgcgcctgcatgcgggtgagctgcgcctgctctatgtcgcgccggagaggttg
atgagcgacgccttccaggaccgtctgcgcgacctggatatttccctgttcgccatcgac
gaagcgcactgcgtcagtcaatgggggcatgatttcaggccggaatatgtgcgactgggc
gagctgcgcagccgctttccccaggtacccatggttgctctgaccgcaacggctgatccg
cagacccgcaacgatatagcgcagcgattgaagctggagcgggcgcgtatctttgtggca
ggcttcgatcgccccaatatccgttacacgatcactgaaaaagccaaacccttccagcag
ttgatgacctttttgggctccaggcacaaccaggcgggaatcgtttatgccctgtcgcgc
aaaagaaccgagcaggtcgcccaccgcctgagggagcaggggatcgatgcggcaccctac
cacgccgggctcggtgaagaggagcggcgcagggtgcaggaggcttttcaacgcgacgat
ttgcgggtggtggtggcgacggtcgccttcggcatgggaatcgataagcctaatgtgcgt
tttgtcgttcattacgacctgccgaaaaatattgaaagctattaccaggaaaccggacgc
gcgggacgtgacggtctgccgtccgaggcgctgctgctgttcgggcccggcgatgtggcg
caggcccgcgccctgatcgaaaagaatcagaatccgaatcagagaaggatcgagctgcac
aagctcaataccatggtcggcctgtgcgaggcgcagatctgccgccgacgggtgctgctg
ggctacttcggtgatgagctgaatgaagattgcggcaactgcgacctgtgtctcgatccc
ccggagcggttcgacgctacggtgccggcgcagaaagccctttcctgcgtgttccgtgtc
ggccagcggttcggcgtcggtcatgtcgtcgacgtgctgcgtggtgccgataatgagcgt
atccgccgtctggggcatgagcgcctgtcgacttacggcatcggtgccgacctcggcgta
gatgagtggaacagtctattacgccatctcgttcacctggggtatctgacacaggatgcg
gcgcaatattccgtactcaaactgacggaaaaggcgcggccgattttgcggggagaagag
aagctggtgctgccgcgcccccgcacccgggtggagacgccccgcaaagtcaaacgcaaa
ggtcgggaggacctggactatgacgcggaattgtttgaagcccttcgccgcctgcgtaaa
gagctcgccgacgcagccgccgtcccgccttttgtggttttcagtgacgccaccctggcg
gagatggcggcctttatccccagggatcgcgatgcactgttgagcatcaacggggtgggg
caggccaagcttaagcgctacggtgaggaattcctgcgtgttctgcgcaatcatggccag
ggcgaggatgccgctgaagacaacagtattcttttggtggaacacgaatga
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