Geoalkalibacter subterraneus: GSUB_04730
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Entry
GSUB_04730 CDS
T03585
Name
(GenBank) HD family phosphohydrolase
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
gsb
Geoalkalibacter subterraneus
Brite
KEGG Orthology (KO) [BR:
gsb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gsb03019
]
GSUB_04730
Messenger RNA biogenesis [BR:
gsb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GSUB_04730
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Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
HDOD
Cas3_HD
Exo_endo_phos_3
Motif
Other DBs
NCBI-ProteinID:
AJF06002
UniProt:
A0A0B5FCU7
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Position
1051045..1052226
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AA seq
393 aa
AA seq
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MKQVYVKDVKERNWVECPFLVRDKIMAMAKNGKPYMTLKLMDRTGEIEGRVWDRVDEFSS
RFEKDDFIFARGKASVYMGKMQLVVQDLERLDEASIDLGDYLPTSDCDPAEMEARLRDKV
ANIGDSHLRRLMESFLADDDFLRRFVMAPAAKAMHHVYLGGLLEHSLAVADLVDDVSGRY
PGLNRDLLVTGALLHDVGKIDELCYARSFDYTDEGKLIGHIVIGTELVEDKIRDLEGFPR
KTAVLLKHLLLSHHGQYEYGSPKRPKTVEAVILNFLDDLDSKINGVRTHIEREPDNPSGW
TSYHRLYDRYFFKDATPANEVLSDQADSRPSTDQARTTPQPAVKPAAAPAKKDATQSNKE
DRPRRRANKGFTLGEQLRGKSLDLFSTENSEKE
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
gtgaagcaggtttatgtcaaggatgtaaaggaacgtaactgggtggagtgcccctttctg
gtgcgcgataaaatcatggcgatggccaagaacggcaaaccctacatgacgctcaagctc
atggatcgcaccggtgagatcgaaggacgggtctgggaccgggtcgatgaattctccagc
cgttttgaaaaggacgatttcatcttcgctcgcggcaaggcgagtgtctacatgggcaaa
atgcagctggtcgtgcaggaccttgagcgcctcgatgaggcgagtatcgatctgggcgac
tacctgccgacctccgactgtgatcctgcggagatggaggccaggctgcgcgacaaagtt
gcaaacatcggcgacagccatctgcgccgcctgatggagagcttcctggccgatgacgat
tttctcaggcgttttgtcatggcccctgcggcaaaggccatgcaccatgtctaccttggc
gggttgctggaacacagcctggcggtggccgaccttgttgacgacgtcagcgggcgctat
cccggcctcaatcgcgatctgctggtgaccggcgctctgctgcacgatgtgggcaaaatc
gatgaattgtgctatgcgcgatccttcgactatacagatgaaggcaagctgatcggccat
atcgtcatcggcacagaattggtcgaagataaaatccgtgaccttgaagggttcccccgc
aaaaccgcggtgctgctcaaacatctgcttctgtcgcatcacgggcagtacgagtatggt
tcccccaaacggcccaagacggttgaagcggttatcctgaatttcctcgacgatctggac
tccaagatcaacggcgtgcgtacccatattgaacgtgagccggacaatccgagcggttgg
accagctatcaccggctttatgatcgatactttttcaaggacgcaacgccggccaatgaa
gttctgtccgatcaggctgactcccggccatcgacagaccaagcgcgtaccacgccgcag
cctgccgttaaacctgcggctgcgcccgcgaagaaagacgccacgcaaagcaataaagag
gatcgcccccggcgccgcgccaataaaggcttcactctgggcgagcagctgcgcggcaaa
agtctggatctgttttccactgaaaattccgagaaggagtag
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