Geoalkalibacter subterraneus: GSUB_10685
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Entry
GSUB_10685 CDS
T03585
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
gsb
Geoalkalibacter subterraneus
Pathway
gsb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gsb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GSUB_10685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gsb03400
]
GSUB_10685
Enzymes [BR:
gsb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
GSUB_10685
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
GSUB_10685
DNA repair and recombination proteins [BR:
gsb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GSUB_10685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_6
HscB_4_cys
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AJF06927
UniProt:
A0A0B5FFK4
LinkDB
All DBs
Position
complement(2302651..2303466)
Genome browser
AA seq
271 aa
AA seq
DB search
MPELPEVETIRRGLAPHLIGRTLRQATVRQSRLRRPVPQALQDECIGASVQKVGRRGKYL
LFYTERGTLIWHLGMSGSLRILTDGGRAEKHDHIDLVFEGEICLRYRDPRRFGLVEWTEA
DPLEHPLLSHLGAEPLEDKFDGAYLWHRSRSRKIPLKNFIMDARVVVGVGNIYASEALFQ
AGLRPDRLAGSLTKKLAEKLAAAIKDVLTRAIEAGGTSLRDFVDGQGQPGYFAQELKVYG
RAGQPCPACGEPIGKIVVGQRSSFFCPRCQK
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgaattgccggaagtcgagacgatccgacggggacttgcgccccatcttatcgga
cgcacccttcgtcaggccacggtgcggcaatcccgtctgcggcgccctgtgccccaggct
ttacaggacgaatgcatcggcgcttccgtgcagaaagttggtcgccgcggcaagtacctt
cttttctacaccgagcgcggcaccctgatctggcatctgggtatgtcgggcagcctgcgt
atcctgaccgatggaggcagggcagaaaaacatgatcacatcgatcttgtttttgagggc
gaaatctgcctgcgctaccgtgatccgcggcgtttcggcctggttgagtggacggaggct
gatccccttgagcatcctctgttgagccatctcggggcagagccgctggaggataaattt
gacggcgcctatctgtggcaccgttcacgcagccgaaaaatacccctgaaaaatttcatc
atggatgcgcgggtggtggtgggcgtcggcaatatttacgccagtgaggctttatttcag
gcagggcttcgtcccgaccgcctggccggcagtttgaccaaaaagctggctgaaaaattg
gccgctgcgatcaaagatgtcctgacccgcgcaatcgaagccgggggcacctctctgcgg
gattttgtcgacgggcaggggcagccgggatacttcgcacaggaactcaaggtttacggg
cgggcggggcagccctgtccggcgtgcggagagccgatcggcaaaatagtggtcgggcag
cgttccagctttttctgtccccgctgccagaaatga
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